| non port: biology/samtools/Makefile |
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SVNWeb
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Number of commits found: 22 |
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Fri, 24 Feb 2023
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[ 23:27 Jason W. Bacon (jwb)  ]    1993bfc
biology/samtools: Update to 1.17
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
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Thu, 5 Jan 2023
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[ 23:17 Jason W. Bacon (jwb) ] 193567c
biology/samtools: Update to 1.16.1
New "reference" subcommand to extract CRAM features (1.16)
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Sat, 26 Feb 2022
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[ 15:04 Jason W. Bacon (jwb) ] 822ec74
biology/samtools: Update to 1.15
Several small enhancements and a few bug fixes
Changes: https://github.com/samtools/samtools/releases
Reported by: portscout
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Sat, 18 Dec 2021
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[ 17:56 Jason W. Bacon (jwb) ] d0228a8
biology/samtools: Update to 1.14
Several enhancements and minor bug fixes
Changes: https://github.com/samtools/samtools/tags
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Mon, 12 Jul 2021
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[ 13:24 Jason W. Bacon (jwb) ] 1c1b494
biology/samtools: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/samtools/releases/tag/1.13
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sat, 20 Mar 2021
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[ 17:14 jwb ]   (Only the first 10 of 17 ports in this commit are shown above. )
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thu, 5 Nov 2020
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[ 20:32 jwb ]
biology/samtools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/samtools/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 18:22 jwb ]
biology/samtools: Upgrade to 1.10
Numerous bug fixes and enhancements:
https://github.com/samtools/samtools/releases/tag/1.10
Take maintainership per ports/248089
PR: ports/248089
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[ 17:40 jwb ] (Only the first 10 of 12 ports in this commit are shown above. )
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Thu, 2 Aug 2018
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[ 19:28 fernape ]
biology/samtools: update to 1.9
PR: 230171
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16569
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Mon, 4 Dec 2017
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[ 15:27 mat ]
Add a USES=python:env, that will not add a dependency on Python.
It has the same effect than setting PYTHON_NO_DEPENDS, but in a more
compact way.
Sponsored by: Absolight
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ] (Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Thu, 26 May 2016
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[ 20:28 pi ]
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 1 Apr 2016
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[ 13:29 mat ] (Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Mon, 1 Feb 2016
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[ 21:59 marino ]
biology/samtools: document ncurses requirement (USES+=ncurses)
approved by: infrastructure blanket
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Fri, 25 Dec 2015
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[ 01:31 junovitch ] (Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Wed, 6 May 2015
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[ 15:16 mat ] (Only the first 10 of 348 ports in this commit are shown above. )
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight
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Fri, 6 Mar 2015
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[ 12:53 robak ]
biology/samtools: update 1.1 -> 1.2
PR: 198292
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Mon, 15 Dec 2014
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[ 21:59 pawel ]
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
PR: 195592
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found: 22 |
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