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non port: biology/py-scikit-bio/Makefile

Number of commits found: 23

Thursday, 3 Aug 2023
07:02 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-scikit-bio: Update 0.5.8 → 0.5.9

Reported by:	portscout
commit hash: 0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d commit hash: 0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d commit hash: 0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d commit hash: 0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d 0f9f8aa
Tuesday, 27 Jun 2023
19:34 Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb 3d9a815
Sunday, 7 May 2023
23:55 Po-Chuan Hsieh (sunpoet) search for other commits by this committer
www/py-cachecontrol: Fix port

- Use lowercase PORTNAME
- Fix WWW
- Fix LICENSE
- Fix FILECACHE and REDIS options: add missing RUN_DEPENDS
- Bump PORTREVISION for package change

PR:		266640
Approved by:	maintainer (timeout, 3+ months)
commit hash: 315936a0b5f48c4c5464a0dd346d30371896d06a commit hash: 315936a0b5f48c4c5464a0dd346d30371896d06a commit hash: 315936a0b5f48c4c5464a0dd346d30371896d06a commit hash: 315936a0b5f48c4c5464a0dd346d30371896d06a 315936a
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Monday, 20 Mar 2023
15:30 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-scikit-bio: Update 0.5.7 → 0.5.8

Reported by:	portscout
commit hash: 179798616f7741de86d2b4607427feb5c6510720 commit hash: 179798616f7741de86d2b4607427feb5c6510720 commit hash: 179798616f7741de86d2b4607427feb5c6510720 commit hash: 179798616f7741de86d2b4607427feb5c6510720 1797986
06:05 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-scikit-bio: Update 0.5.7 → 0.5.7

Reported by:	portscout
commit hash: 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 commit hash: 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 commit hash: 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 commit hash: 9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8 9f5d0a6
Wednesday, 11 Jan 2023
15:58 Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 77d6847
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Friday, 3 Jun 2022
22:56 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-scikit-bio: Broken on aarch64

Reported by:	fallout
commit hash: 45c4e1c9f3b0c920267c38538262e4440d3f9eea commit hash: 45c4e1c9f3b0c920267c38538262e4440d3f9eea commit hash: 45c4e1c9f3b0c920267c38538262e4440d3f9eea commit hash: 45c4e1c9f3b0c920267c38538262e4440d3f9eea 45c4e1c
Thursday, 21 Apr 2022
17:11 Piotr Kubaj (pkubaj) search for other commits by this committer
biology/py-scikit-bio: drop unnecessary USE_GCC on powerpc64
commit hash: 52e46764cf10f8485f55c2cc71549cf5ca39aedc commit hash: 52e46764cf10f8485f55c2cc71549cf5ca39aedc commit hash: 52e46764cf10f8485f55c2cc71549cf5ca39aedc commit hash: 52e46764cf10f8485f55c2cc71549cf5ca39aedc 52e4676
Tuesday, 19 Apr 2022
12:09 Piotr Kubaj (pkubaj) search for other commits by this committer
biology/py-scikit-bio: build with clang on powerpc64le
commit hash: a3f5e20929cdb8a33ac629e005cc49261472b2db commit hash: a3f5e20929cdb8a33ac629e005cc49261472b2db commit hash: a3f5e20929cdb8a33ac629e005cc49261472b2db commit hash: a3f5e20929cdb8a33ac629e005cc49261472b2db a3f5e20
Friday, 15 Apr 2022
19:09 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-scikit-bio: Update 0.5.6 -> 0.5.7

Reported by:	portscout
commit hash: 1aa4b199504fab66ea1575a27c7280b4b41ee6b4 commit hash: 1aa4b199504fab66ea1575a27c7280b4b41ee6b4 commit hash: 1aa4b199504fab66ea1575a27c7280b4b41ee6b4 commit hash: 1aa4b199504fab66ea1575a27c7280b4b41ee6b4 1aa4b19
Sunday, 6 Feb 2022
18:36 Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e bdd2d4a
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Tuesday, 9 Mar 2021
10:38 pkubaj search for other commits by this committer
biology/py-scikit-bio: fix build on powerpc64

GCC is also necessary on powerpc64:
In file included from skbio/alignment/_ssw_wrapper.c:626:
In file included from skbio/alignment/_lib/ssw.h:17:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
Original commitRevision:567918 
01:21 pkubaj search for other commits by this committer
biology/py-scikit-bio: fix build on powerpc64le

Use GCC:
In file included from skbio/alignment/_ssw_wrapper.c:626:
In file included from skbio/alignment/_lib/ssw.h:17:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
Original commitRevision:567882 
Friday, 20 Nov 2020
07:16 adamw search for other commits by this committer
Add education virtual category

PR:		248402
Submitted by:	PauAmma
Original commitRevision:555738 
Thursday, 24 Sep 2020
23:16 yuri search for other commits by this committer
biology/py-scikit-bio: Fix build on the i386 architecture

Reported by:	fallout
MFH:		2020Q3
Original commitRevision:549974 
Saturday, 15 Aug 2020
12:50 dbaio search for other commits by this committer
devel/ipython: Update to 7.17.0

IPython 7.17+ supports Python 3.7 and above, following NEP 29.
Update consumers to use Python >= 3.7 (avoid break bulk -a).

Changelog:	https://ipython.readthedocs.io/en/latest/whatsnew/version7.html?highlight=7.17#ipython-7-17

Approved by:	dbaio (python, maintainer)
Original commitRevision:544938 
Saturday, 16 May 2020
02:29 yuri search for other commits by this committer
biology/py-scikit-bio: Fix license
Original commitRevision:535346 
02:28 yuri search for other commits by this committer
biology/py-scikit-bio: Remove bogus lines
Original commitRevision:535345 
02:25 yuri search for other commits by this committer
New port: biology/py-scikit-bio: Data structures, algorithms, educational
resources for bioinformatics
Original commitRevision:535344 

Number of commits found: 23