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non port: biology/py-scikit-bio/Makefile
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Number of commits found: 23

Thu, 3 Aug 2023
[ 07:02 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d  commit hash:0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d  commit hash:0f9f8aa4c37e2040645a26a544ca3fcc6b50d83d  0f9f8aa 
biology/py-scikit-bio: Update 0.5.8 → 0.5.9

Reported by:	portscout
Tue, 27 Jun 2023
[ 19:34 Rene Ladan (rene) search for other commits by this committer ]    commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  3d9a815  (Only the first 10 of 4481 ports in this commit are shown above. View all ports for this commit)
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
Sun, 7 May 2023
[ 23:55 Po-Chuan Hsieh (sunpoet) search for other commits by this committer ]    commit hash:315936a0b5f48c4c5464a0dd346d30371896d06a  commit hash:315936a0b5f48c4c5464a0dd346d30371896d06a  commit hash:315936a0b5f48c4c5464a0dd346d30371896d06a  315936a 
www/py-cachecontrol: Fix port

- Use lowercase PORTNAME
- Fix WWW
- Fix LICENSE
- Fix FILECACHE and REDIS options: add missing RUN_DEPENDS
- Bump PORTREVISION for package change

PR:		266640
Approved by:	maintainer (timeout, 3+ months)
Sun, 23 Apr 2023
[ 09:09 Gerald Pfeifer (gerald) search for other commits by this committer ]    commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  8d3e020  (Only the first 10 of 2091 ports in this commit are shown above. View all ports for this commit)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
Mon, 20 Mar 2023
[ 15:30 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:179798616f7741de86d2b4607427feb5c6510720  commit hash:179798616f7741de86d2b4607427feb5c6510720  commit hash:179798616f7741de86d2b4607427feb5c6510720  1797986 
biology/py-scikit-bio: Update 0.5.7 → 0.5.8

Reported by:	portscout
[ 06:05 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8  commit hash:9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8  commit hash:9f5d0a66ddb8a315dd8ef92754d90ad1ddddf8f8  9f5d0a6 
biology/py-scikit-bio: Update 0.5.7 → 0.5.7

Reported by:	portscout
Wed, 11 Jan 2023
[ 15:58 Dmitry Marakasov (amdmi3) search for other commits by this committer ]    commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656  commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656  commit hash:77d68471aded6907dbbcb5ef50d557e4c69db656  77d6847  (Only the first 10 of 3335 ports in this commit are shown above. View all ports for this commit)
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
Wed, 7 Sep 2022
[ 21:10 Stefan Eßer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 3 Jun 2022
[ 22:56 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:45c4e1c9f3b0c920267c38538262e4440d3f9eea  commit hash:45c4e1c9f3b0c920267c38538262e4440d3f9eea  commit hash:45c4e1c9f3b0c920267c38538262e4440d3f9eea  45c4e1c 
biology/py-scikit-bio: Broken on aarch64

Reported by:	fallout
Thu, 21 Apr 2022
[ 17:11 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:52e46764cf10f8485f55c2cc71549cf5ca39aedc  commit hash:52e46764cf10f8485f55c2cc71549cf5ca39aedc  commit hash:52e46764cf10f8485f55c2cc71549cf5ca39aedc  52e4676 
biology/py-scikit-bio: drop unnecessary USE_GCC on powerpc64
Tue, 19 Apr 2022
[ 12:09 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:a3f5e20929cdb8a33ac629e005cc49261472b2db  commit hash:a3f5e20929cdb8a33ac629e005cc49261472b2db  commit hash:a3f5e20929cdb8a33ac629e005cc49261472b2db  a3f5e20 
biology/py-scikit-bio: build with clang on powerpc64le
Fri, 15 Apr 2022
[ 19:09 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:1aa4b199504fab66ea1575a27c7280b4b41ee6b4  commit hash:1aa4b199504fab66ea1575a27c7280b4b41ee6b4  commit hash:1aa4b199504fab66ea1575a27c7280b4b41ee6b4  1aa4b19 
biology/py-scikit-bio: Update 0.5.6 -> 0.5.7

Reported by:	portscout
Sun, 6 Feb 2022
[ 18:36 Stefan Eßer (se) search for other commits by this committer ]    commit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9e  commit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9e  commit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9e  bdd2d4a  (Only the first 10 of 69 ports in this commit are shown above. View all ports for this commit)
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Tue, 9 Mar 2021
[ 10:38 pkubaj search for other commits by this committer ] Original commit   Revision:567918
biology/py-scikit-bio: fix build on powerpc64

GCC is also necessary on powerpc64:
In file included from skbio/alignment/_ssw_wrapper.c:626:
In file included from skbio/alignment/_lib/ssw.h:17:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
[ 01:21 pkubaj search for other commits by this committer ] Original commit   Revision:567882
biology/py-scikit-bio: fix build on powerpc64le

Use GCC:
In file included from skbio/alignment/_ssw_wrapper.c:626:
In file included from skbio/alignment/_lib/ssw.h:17:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion
between vector type '__m64' (vector of 1 'long long' value) and integer type
'int' of different size
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
Fri, 20 Nov 2020
[ 07:16 adamw search for other commits by this committer ] Original commit   Revision:555738 (Only the first 10 of 76 ports in this commit are shown above. View all ports for this commit)
Add education virtual category

PR:		248402
Submitted by:	PauAmma
Thu, 24 Sep 2020
[ 23:16 yuri search for other commits by this committer ] Original commit   Revision:549974
biology/py-scikit-bio: Fix build on the i386 architecture

Reported by:	fallout
MFH:		2020Q3
Sat, 15 Aug 2020
[ 12:50 dbaio search for other commits by this committer ] Original commit   Revision:544938 (Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
devel/ipython: Update to 7.17.0

IPython 7.17+ supports Python 3.7 and above, following NEP 29.
Update consumers to use Python >= 3.7 (avoid break bulk -a).

Changelog:	https://ipython.readthedocs.io/en/latest/whatsnew/version7.html?highlight=7.17#ipython-7-17

Approved by:	dbaio (python, maintainer)
Sat, 16 May 2020
[ 02:29 yuri search for other commits by this committer ] Original commit   Revision:535346
biology/py-scikit-bio: Fix license
[ 02:28 yuri search for other commits by this committer ] Original commit   Revision:535345
biology/py-scikit-bio: Remove bogus lines
[ 02:25 yuri search for other commits by this committer ] Original commit   Revision:535344
New port: biology/py-scikit-bio: Data structures, algorithms, educational
resources for bioinformatics

Number of commits found: 23