Port details on branch 2022Q2 |
- py-scikit-bio Data structures, algorithms, educational resources for bioinformatics
- 0.5.9 biology =0 0.5.9Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2020-05-16 02:25:40
- Last Update: 2023-08-03 07:02:05
- Commit Hash: 0f9f8aa
- Also Listed In: education python
- License: BSD3CLAUSE
- WWW:
- http://scikit-bio.org/
- Description:
- scikit-bio is an open-source python package providing data structures,
algorithms, and educational resources for bioinformatics.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}scikit-bio>0:biology/py-scikit-bio@${PY_FLAVOR}
- Conflicts:
- CONFLICTS_INSTALL:
- Conflicts Matches:
-
There are no Conflicts Matches for this port. This is usually an error.
- To install the port:
- cd /usr/ports/biology/py-scikit-bio/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-scikit-bio
- pkg install py39-scikit-bio
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-scikit-bio listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-scikit-bio
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1691038332
SHA256 (scikit-bio-0.5.9.tar.gz) = 7ae044dc8bee231900248adc3a8659077e76140d56ac9f42bd01fb7981014910
SIZE (scikit-bio-0.5.9.tar.gz) = 3542513
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-setuptools>0 : devel/py-setuptools@py39
- py39-wheel>0 : devel/py-wheel@py39
- cython-3.9 : lang/cython@py39
- python3.9 : lang/python39
- py39-build>=0 : devel/py-build@py39
- py39-installer>=0 : devel/py-installer@py39
- Test dependencies:
-
- py39-pytest>=7,1 : devel/py-pytest@py39
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-decorator>=3.4.2 : devel/py-decorator@py39
- py39-h5py>=3.6.0 : science/py-h5py@py39
- py39-hdmedians>=0.14.1 : math/py-hdmedians@py39
- py39-ipython>=3.2.0 : devel/ipython@py39
- py39-matplotlib>=1.4.3 : math/py-matplotlib@py39
- py39-natsort>=4.0.3 : devel/py-natsort@py39
- py39-pandas>=1.5.0 : math/py-pandas@py39
- py39-requests>=2.20.0 : www/py-requests@py39
- py39-scikit-learn>=0.19.1 : science/py-scikit-learn@py39
- py39-scipy>0 : science/py-scipy@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_py-scikit-bio
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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