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Port details on branch 2022Q2
py-scikit-bio Data structures, algorithms, educational resources for bioinformatics
0.5.9 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.9Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2020-05-16 02:25:40
Last Update: 2023-08-03 07:02:05
Commit Hash: 0f9f8aa
Also Listed In: education python
License: BSD3CLAUSE
WWW:
http://scikit-bio.org/
Description:
scikit-bio is an open-source python package providing data structures, algorithms, and educational resources for bioinformatics.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}scikit-bio>0:biology/py-scikit-bio@${PY_FLAVOR}
Conflicts:
CONFLICTS_INSTALL:
  • py39-ddtrace
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/py-scikit-bio/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-scikit-bio
  • pkg install py39-scikit-bio
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-scikit-bio listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-scikit-bio
Package flavors (<flavor>: <package>)
  • py39: py39-scikit-bio
distinfo:
TIMESTAMP = 1691038332 SHA256 (scikit-bio-0.5.9.tar.gz) = 7ae044dc8bee231900248adc3a8659077e76140d56ac9f42bd01fb7981014910 SIZE (scikit-bio-0.5.9.tar.gz) = 3542513

Packages (timestamps in pop-ups are UTC):
py39-scikit-bio
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly-0.5.9--0.5.9-0.5.9-
FreeBSD:14:latest-0.5.9-0.5.90.5.9---
FreeBSD:14:quarterly-0.5.9--0.5.9-0.5.9-
FreeBSD:15:latest-0.5.9n/a0.5.9n/a-0.5.9-
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-setuptools>0 : devel/py-setuptools@py39
  3. py39-wheel>0 : devel/py-wheel@py39
  4. cython-3.9 : lang/cython@py39
  5. python3.9 : lang/python39
  6. py39-build>=0 : devel/py-build@py39
  7. py39-installer>=0 : devel/py-installer@py39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-decorator>=3.4.2 : devel/py-decorator@py39
  3. py39-h5py>=3.6.0 : science/py-h5py@py39
  4. py39-hdmedians>=0.14.1 : math/py-hdmedians@py39
  5. py39-ipython>=3.2.0 : devel/ipython@py39
  6. py39-matplotlib>=1.4.3 : math/py-matplotlib@py39
  7. py39-natsort>=4.0.3 : devel/py-natsort@py39
  8. py39-pandas>=1.5.0 : math/py-pandas@py39
  9. py39-requests>=2.20.0 : www/py-requests@py39
  10. py39-scikit-learn>=0.19.1 : science/py-scikit-learn@py39
  11. py39-scipy>0 : science/py-scipy@py39
  12. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_py-scikit-bio
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/s/scikit-bio/
  2. https://pypi.org/packages/source/s/scikit-bio/
Collapse this list.

There are no commits on branch 2022Q2 for this port