| Port details |
- py-pybigwig Python access to bigWig files using libBigWig
- 0.3.20 biology
 =0      Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2021-10-13 13:09:05
- Last Update: 2023-03-08 13:50:30
- Commit Hash: fbe7ee5
- Also Listed In: python
- License: MIT
- Description:
- A python extension, written in C, for quick access to bigBed files and access
to and creation of bigWig files. This extension uses libBigWig for local and
remote file access.
  ¦  ¦  ¦  ¦  - pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-pybigwig@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-pybigwig/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-pybigwig
- pkg install py39-pyBigWig
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-pyBigWig listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-pyBigWig
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1678281929
SHA256 (pyBigWig-0.3.20.tar.gz) = ba63ffb302647a6bcda75187a9d8576bb249e37ae6e83379ddb31e22cd7a8c0b
SIZE (pyBigWig-0.3.20.tar.gz) = 65091
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Library dependencies:
-
- libcurl.so : ftp/curl
- This port is required by:
- for Run
-
- biology/py-crossmap
- biology/py-deeptools
Configuration Options:- No options to configure
- Options name:
- biology_py-pybigwig
- USES:
- localbase python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Notes from UPDATING |
- These upgrade notes are taken from /usr/ports/UPDATING
- 2017-11-30
Affects: */py* Author: mat@FreeBSD.org Reason:
Ports using Python via USES=python are now flavored. All the py3-* ports
have been removed and folded into their py-* master ports.
People using Poudriere 3.2+ and binary packages do not have to do anything.
For other people, to build the Python 3.6 version of, for example,
databases/py-gdbm, you need to run:
# make FLAVOR=py36 install
|
Number of commits found: 9
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
0.3.20
08 Mar 2023 13:50:30
 |
Jason W. Bacon (jwb) |
biology/py-pybigwig: Update to 0.3.20
Build system fixes
Reported by: portscout |
0.3.18
11 Jan 2023 15:58:34
|
Dmitry Marakasov (amdmi3) |
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
0.3.18
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
0.3.18
13 Oct 2021 21:21:32
|
Jason W. Bacon (jwb) |
biology/py-bigwig: Rename to biology/py-pybigwig
Fully match upstream name |
0.3.18_1
13 Oct 2021 18:57:58
|
Antoine Brodin (antoine) |
biology/py-pybigwig: remove, duplicate of biology/py-bigwig |
0.3.18_1
13 Oct 2021 16:02:12
|
Jason W. Bacon (jwb) |
biology/py-py-pybigwig: Patch out setup.py warning
Neglected to add this file during previous commit |
0.3.18_1
13 Oct 2021 16:02:12
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Fix poudriere build
Typo in post-install |
0.3.18
13 Oct 2021 13:03:21
|
Jason W. Bacon (jwb) |
biology/py-pybigwig: Python access to bigWig files using libBigWig
py-bigwig is a python extension, written in C, for quick access to
bigBed files and access to and creation of bigWig files. This extension
uses libBigWig for local and remote file access. |
Number of commits found: 9
|
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