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non port: biology/py-orange3-bioinformatics/Makefile

Number of commits found: 21

Thursday, 29 Feb 2024
07:18 Charlie Li (vishwin) search for other commits by this committer
devel/py-setuptools-scm: update to 8.0.4

Directory and PORTNAME changed to match normalised name in release
tarball; consumers updated to match.

Although setuptools itself is specified as a run dependency in the
Python package metadata, it is currently left out here to prevent
environment pollution until at least PR 270510 is committed.
Additionally, this version of setuptools-scm requires setuptools>=61,
which means this version is only meant for USE_PYTHON=pep517 ports
as all USE_PYTHON=distutils ports will switch to devel/py-setuptools58
also after PR 270510. science/py-emmet-core is switched to
devel/py-setuptools_scm7 accordingly, as it specifies setuptools-scm<8.
devel/py-{flit-scm,hatch-vcs} have ${PY_SETUPTOOLS} added to
RUN_DEPENDS to compensate.

Further details: https://wiki.freebsd.org/Python/setuptools

Reported by: yuri
Co-authored by: matthew
Exp-run by: antoine (earlier iteration)
Approved by: yuri (science/py-emmet-core, previous iteration)
PR: 272134
Differential Revision: https://reviews.freebsd.org/D39288
commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 commit hash: 5d4139f8bdb67bd6e8328422f9762661bd0d6454 5d4139f
Monday, 31 Jul 2023
16:42 Po-Chuan Hsieh (sunpoet) search for other commits by this committer
biology/py-orange3-bioinformatics: Change RUN_DEPENDS from py-requests-cache to
py-requests-cache0

- Bump PORTREVISION for dependency change
commit hash: 2724b9eb680c15502228fb4ebeb34cc2f691f9ea commit hash: 2724b9eb680c15502228fb4ebeb34cc2f691f9ea commit hash: 2724b9eb680c15502228fb4ebeb34cc2f691f9ea commit hash: 2724b9eb680c15502228fb4ebeb34cc2f691f9ea 2724b9e
Tuesday, 27 Jun 2023
19:34 Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb 3d9a815
Tuesday, 25 Apr 2023
15:17 Christian Weisgerber (naddy) search for other commits by this committer
audio/opus: bump consumers after update to 1.4
commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96 commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96 commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96 commit hash: feb1fa34f58ea796656b86a81c2a2996b0b03c96 feb1fa3
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Wednesday, 11 Jan 2023
15:58 Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 77d6847
Tuesday, 6 Dec 2022
11:12 Rene Ladan (rene) search for other commits by this committer
Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"

This reverts commit f9f811816c9a50a19570ef4ee66dc6e3f43baec5.

security/py-keyrings.alt was updated to use supported dependencies in
commit a16d8f14ce3bbcae7b17b690069593b5b0c7fb9e
commit hash: c37c0138b3b8b870856b2fae6277fcb9d6dcd3cd commit hash: c37c0138b3b8b870856b2fae6277fcb9d6dcd3cd commit hash: c37c0138b3b8b870856b2fae6277fcb9d6dcd3cd commit hash: c37c0138b3b8b870856b2fae6277fcb9d6dcd3cd c37c013
Friday, 30 Sep 2022
20:06 Rene Ladan (rene) search for other commits by this committer
all: deprecate ports depending on expired security/py-keyrings.alt
commit hash: f9f811816c9a50a19570ef4ee66dc6e3f43baec5 commit hash: f9f811816c9a50a19570ef4ee66dc6e3f43baec5 commit hash: f9f811816c9a50a19570ef4ee66dc6e3f43baec5 commit hash: f9f811816c9a50a19570ef4ee66dc6e3f43baec5 f9f8118
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Sunday, 23 Jan 2022
20:56 Rene Ladan (rene) search for other commits by this committer
cleanup: remove transitive py27 deprecation (www/qt5-webengine)
commit hash: 48d98ef9181e828b575f37e1841ad53e5def5987 commit hash: 48d98ef9181e828b575f37e1841ad53e5def5987 commit hash: 48d98ef9181e828b575f37e1841ad53e5def5987 commit hash: 48d98ef9181e828b575f37e1841ad53e5def5987 48d98ef
Tuesday, 27 Apr 2021
08:56 Yuri Victorovich (yuri) search for other commits by this committer
biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1

Reported by:	portscout
commit hash: ce04d9a5ee35cb5f34a91762172aaebd31a8c10f commit hash: ce04d9a5ee35cb5f34a91762172aaebd31a8c10f commit hash: ce04d9a5ee35cb5f34a91762172aaebd31a8c10f commit hash: ce04d9a5ee35cb5f34a91762172aaebd31a8c10f ce04d9a
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Wednesday, 24 Mar 2021
13:34 rene search for other commits by this committer
Mark ports recursively depending on Python 2.7 for expiration on June 23.

For ports optionally dependending on Python 2.7, just mark those options
as expired. Remove konquerer from the x11/kde-baseapps metaport and bump
its PORTREVISION.

Submitted by:	rene
Reviewed by:	portmgr, adridg, ehaupt, lme, madpilot, pizzamig, se, sunpoet, yuri
Approved by:	portmgr
Differential Revision:	https://reviews.freebsd.org/D28665
Original commitRevision:569118 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Wednesday, 16 Jan 2019
11:13 tijl search for other commits by this committer
Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
in the weak wrapper resolves to the weak wrapper itself creating an infinite
call loop that overflows the stack and causes a crash.  Some of the
allocation functions are variants of C++ new and delete and it probably
depends on the compiler whether these variants are used in other parts of
Qt5Webengine.

Remove the weak wrappers (make them Linux specific).  This isn't binary
compatible but we are already breaking that with the changes to the symbol
versions.

[1]
https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4
[2]
https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5
[3]
https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5

Bump all ports that depend on Qt5.

PR:		234070
Exp-run by:	antoine
Approved by:	kde (adridg)
Original commitRevision:490472 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Sunday, 14 Oct 2018
03:22 yuri search for other commits by this committer
biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2

Reported by:	portscout
Original commitRevision:482019 
Thursday, 9 Aug 2018
00:29 yuri search for other commits by this committer
biology/py-orange3-bioinformatics: Update 3.1.1 -> 3.2.0

Reported by:	portscout
Original commitRevision:476712 
Thursday, 12 Jul 2018
20:09 yuri search for other commits by this committer
biology/py-orange3-bioinformatics: Update 3.1.0 -> 3.1.1

Reported by:	portscout
Original commitRevision:474534 
Thursday, 14 Jun 2018
06:25 yuri search for other commits by this committer
New port: biology/py-orange3-bioinformatics: Orange add-on providing common
functionality for bioinformatics
Original commitRevision:472358 

Number of commits found: 21