Port details on branch 2022Q2 |
- py-orange3-bioinformatics Orange add-on providing common functionality for bioinformatics
- 4.3.1_3 biology =0 4.3.1_3Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2018-06-14 06:26:12
- Last Update: 2024-02-29 07:18:32
- Commit Hash: 5d4139f
- Also Listed In: python
- License: GPLv3
- WWW:
- https://github.com/biolab/orange3-bioinformatics
- Description:
- Orange Bioinformatics extends Orange, a data mining software package, with
common functionality for bioinformatics. The provided functionality can be
accessed as a Python library or through a visual programming interface (Orange
Canvas). The latter is also suitable for non-programmers.
Orange Bioinformatics provides access to publicly available data, like GEO data
sets, GO and KEGG. All features can be combined with powerful visualization,
network exploration and data mining techniques from the Orange data mining
framework.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-orange3-bioinformatics/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-orange3-bioinformatics
- pkg install py39-orange3-bioinformatics
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-orange3-bioinformatics listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-orange3-bioinformatics
- Package flavors (<flavor>: <package>)
- py39: py39-orange3-bioinformatics
- distinfo:
- TIMESTAMP = 1619513096
SHA256 (Orange3-Bioinformatics-4.3.1.tar.gz) = 4017518f9eeef0e8a9016a3e1c19b362f9f4d7f3e9dd07da0d8615a96a3b8447
SIZE (Orange3-Bioinformatics-4.3.1.tar.gz) = 2943722
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools-scm>0 : devel/py-setuptools-scm@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- orange3>0 : misc/orange3
- py39-Genesis-PyAPI>0 : biology/py-Genesis-PyAPI@py39
- py39-point-annotator>=2.0 : math/py-point-annotator@py39
- py39-pyclipper>=1.2.0 : math/py-pyclipper@py39
- py39-requests>0 : www/py-requests@py39
- py39-requests-cache0>0 : www/py-requests-cache0@py39
- py39-resdk>0 : biology/py-resdk@py39
- py39-scipy>=1.5.0 : science/py-scipy@py39
- py39-serverfiles>0 : misc/py-serverfiles@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- This port is required by:
- for Run
-
- biology/py-orange3-single-cell
Configuration Options:
- No options to configure
- Options name:
- biology_py-orange3-bioinformatics
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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