notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details on branch 2022Q2
py-orange3-bioinformatics Orange add-on providing common functionality for bioinformatics
4.3.1_3 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.3.1_3Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-06-14 06:26:12
Last Update: 2024-02-29 07:18:32
Commit Hash: 5d4139f
Also Listed In: python
License: GPLv3
WWW:
https://github.com/biolab/orange3-bioinformatics
Description:
Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter is also suitable for non-programmers. Orange Bioinformatics provides access to publicly available data, like GEO data sets, GO and KEGG. All features can be combined with powerful visualization, network exploration and data mining techniques from the Orange data mining framework.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR}
To install the port:
cd /usr/ports/biology/py-orange3-bioinformatics/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-orange3-bioinformatics
  • pkg install py39-orange3-bioinformatics
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-orange3-bioinformatics listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-orange3-bioinformatics
Package flavors (<flavor>: <package>)
  • py39: py39-orange3-bioinformatics
distinfo:
TIMESTAMP = 1619513096 SHA256 (Orange3-Bioinformatics-4.3.1.tar.gz) = 4017518f9eeef0e8a9016a3e1c19b362f9f4d7f3e9dd07da0d8615a96a3b8447 SIZE (Orange3-Bioinformatics-4.3.1.tar.gz) = 2943722

Packages (timestamps in pop-ups are UTC):
py39-orange3-bioinformatics
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly4.3.1_34.3.1_3--4.3.1_3---
FreeBSD:14:latest4.3.1_34.3.1_3--4.3.1_3---
FreeBSD:14:quarterly4.3.1_34.3.1_3--4.3.1_3---
FreeBSD:15:latest4.3.1_34.3.1_3n/a-n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools-scm>0 : devel/py-setuptools-scm@py39
  2. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  3. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. orange3>0 : misc/orange3
  2. py39-Genesis-PyAPI>0 : biology/py-Genesis-PyAPI@py39
  3. py39-point-annotator>=2.0 : math/py-point-annotator@py39
  4. py39-pyclipper>=1.2.0 : math/py-pyclipper@py39
  5. py39-requests>0 : www/py-requests@py39
  6. py39-requests-cache0>0 : www/py-requests-cache0@py39
  7. py39-resdk>0 : biology/py-resdk@py39
  8. py39-scipy>=1.5.0 : science/py-scipy@py39
  9. py39-serverfiles>0 : misc/py-serverfiles@py39
  10. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  11. python3.9 : lang/python39
This port is required by:
for Run
  1. biology/py-orange3-single-cell

Configuration Options:
No options to configure
Options name:
biology_py-orange3-bioinformatics
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/O/Orange3-Bioinformatics/
  2. https://pypi.org/packages/source/O/Orange3-Bioinformatics/
Collapse this list.

There are no commits on branch 2022Q2 for this port