Port details on branch 2022Q2 |
- py-ont-fast5-api Interface to HDF5 files in Oxford Nanopore .fast5 format
- 4.0.2_1 biology =0 4.0.2_1Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2021-08-13 13:36:06
- Last Update: 2023-04-23 09:09:58
- Commit Hash: 8d3e020
- Also Listed In: python
- License: MPL20
- WWW:
- https://pypi.python.org/pypi/ont_fast5_api
- Description:
- The ont_fast5_api is a simple interface to HDF5 files of the Oxford
Nanopore .fast5 file format. It provides:
o Implementation of the fast5 file schema using h5py library
o Methods to interact with and reflect the fast5 file schema
o Tools to convert between multi_read and single_read formats
o Tools to compress/decompress raw data in files
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}ont-fast5-api>0:biology/py-ont-fast5-api@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-ont-fast5-api/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-ont-fast5-api
- pkg install py39-ont-fast5-api
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-ont-fast5-api listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-ont-fast5-api
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1648128656
SHA256 (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = c078dc0d20b02cd9807105415f259e099f1adc8b922d67a1a9fe04321c098361
SIZE (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = 4082466
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- py39-pip>=0 : devel/py-pip@py39
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.16,1<1.25,1 : math/py-numpy@py39
- py39-h5py>=2.2.0 : science/py-h5py@py39
- py39-six>0 : devel/py-six@py39
- py39-progressbar>0 : misc/py-progressbar@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Library dependencies:
-
- libvbz_hdf_plugin.so : archivers/vbz-compression
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:
- No options to configure
- Options name:
- biology_py-ont-fast5-api
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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