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Port details
py-multiqc Aggregate bioinformatics analysis reports across samples and tools
1.15 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.15Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-09-23 16:09:36
Last Update: 2023-08-05 16:18:37
Commit Hash: a084c0b
Also Listed In: python
License: GPLv3
WWW:
https://pypi.python.org/pypi/multiqc
Description:
MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR}
To install the port:
cd /usr/ports/biology/py-multiqc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-multiqc
  • pkg install py39-multiqc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-multiqc listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-multiqc
Package flavors (<flavor>: <package>)
  • py39: py39-multiqc
distinfo:
TIMESTAMP = 1691243629 SHA256 (multiqc-1.15.tar.gz) = ce5359a12226cf4ce372c6fdad142cfe2ae7501ffa97ac7aab544ced4db5ea3c SIZE (multiqc-1.15.tar.gz) = 1077075

Packages (timestamps in pop-ups are UTC):
py39-multiqc
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.151.15--1.15---
FreeBSD:13:quarterly1.151.15--1.15-1.15-
FreeBSD:14:latest1.151.15--1.15---
FreeBSD:14:quarterly1.151.15--1.15-1.15-
FreeBSD:15:latest1.151.15n/a-n/a-1.15-
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  2. python3.9 : lang/python39
Test dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-rich-click>0 : devel/py-rich-click@py39
  3. py39-future>0.14.0 : devel/py-future@py39
  4. py39-coloredlogs>0 : devel/py-coloredlogs@py39
  5. py39-matplotlib>=2.1.1 : math/py-matplotlib@py39
  6. py39-markdown>0 : textproc/py-markdown@py39
  7. py39-networkx>0 : math/py-networkx@py39
  8. py39-rich>0 : textproc/py-rich@py39
  9. py39-yaml>=4 : devel/py-yaml@py39
  10. py39-requests>0 : www/py-requests@py39
  11. py39-simplejson>0 : devel/py-simplejson@py39
  12. py39-Jinja2>=2.9 : devel/py-Jinja2@py39
  13. py39-lzstring>0 : archivers/py-lzstring@py39
  14. py39-spectra>=0.0.10 : graphics/py-spectra@py39
  15. py39-colormath>0 : math/py-colormath@py39
  16. py39-kiwisolver>0 : math/py-kiwisolver@py39
  17. py39-setuptools>=63.1.0 : devel/py-setuptools@py39
  18. python3.9 : lang/python39
This port is required by:
for Run
  1. biology/atac-seq
  2. biology/biostar-tools
  3. biology/chip-seq
  4. biology/rna-seq

Configuration Options:
No options to configure
Options name:
biology_py-multiqc
USES:
python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/m/multiqc/
  2. https://pypi.org/packages/source/m/multiqc/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.15
05 Aug 2023 16:18:37
commit hash: a084c0b088223ccd845fd8cdcd5ed77022b3fd04commit hash: a084c0b088223ccd845fd8cdcd5ed77022b3fd04commit hash: a084c0b088223ccd845fd8cdcd5ed77022b3fd04commit hash: a084c0b088223ccd845fd8cdcd5ed77022b3fd04 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-multiqc: Update to 1.15

Major performance boost for file search
New "Librarian" module
Numerous enhancements and module updates
Changes: https://github.com/ewels/MultiQC/releases

Reported by:    portscout
1.14
27 Jun 2023 19:34:34
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacbcommit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb files touched by this commit
Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
1.14
12 May 2023 12:55:38
commit hash: 05c52e655e8a0668426829f50b21ef8fdf3c73e4commit hash: 05c52e655e8a0668426829f50b21ef8fdf3c73e4commit hash: 05c52e655e8a0668426829f50b21ef8fdf3c73e4commit hash: 05c52e655e8a0668426829f50b21ef8fdf3c73e4 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/py-multiqc: Update to 1.14

Numerous new features, enhancements and bug fixes

Changes: https://github.com/ewels/MultiQC/releases
1.10_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.10
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.10
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.10
10 May 2021 20:13:20
commit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5ebcommit hash: 1d44af58980136b882d146f21d8776943a14c5eb files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
1.10
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.10
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.10
20 Mar 2021 14:25:48
Revision:568866Original commit files touched by this commit
jwb search for other commits by this committer
biology/py-multiqc: Update to 1.10

Numerous new features, a few bug fixes since 1.9

Reported by:    portscout
1.9
05 Feb 2021 01:37:04
Revision:564072Original commit files touched by this commit
jwb search for other commits by this committer
biology/py-multiqc: Update to 1.9

Fix runtime error due to incompatibility of 1.8 with latest matplotlib
Drop python2 support
Numerous new features and bug fixes
1.8
19 Sep 2020 14:15:43
Revision:548989Original commit files touched by this commit
antoine search for other commits by this committer
Unbreak bulk -a
1.8
26 Nov 2019 16:25:09
Revision:518470Original commit files touched by this commit
jwb search for other commits by this committer
biology/py-multiqc: Upgrade to 1.8

Major enhancements including 6 new modules and improvements to existing modules
Numerous minor fixes and enhancements

Reported by:    portscout
1.7
23 Sep 2019 16:09:30
Revision:512646Original commit files touched by this commit
jwb search for other commits by this committer
biology/py-multiqc: Aggregate bioinformatics analysis reports

MultiQC searches a given directory for analysis logs and compiles an HTML
report. It's a general use tool, perfect for summarising the output from
numerous bioinformatics tools.

Number of commits found: 15