Port details on branch 2022Q2 |
- py-dnaio Read and write FASTQ and FASTA
- 1.2.0 biology =0 1.2.0Version of this port present on the latest quarterly branch.
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2019-03-24 19:40:53
- Last Update: 2024-04-10 23:41:31
- Commit Hash: fa60f36
- Also Listed In: python
- License: MIT
- WWW:
- https://pypi.python.org/pypi/dnaio
- Description:
- dnaio is a Python 3 library for fast input and output of FASTQ and FASTA files.
It supports paired-end data in separate files, interleaved paired-end in a
single file and compression using gzip, bzip, and xz.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}dnaio>0:biology/py-dnaio@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-dnaio/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-dnaio
- pkg install py39-dnaio
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-dnaio listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-dnaio
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1707060534
SHA256 (dnaio-1.2.0.tar.gz) = d0528c23516fe4e947970bdef33c423f0a30ab3b083bd4f6f049fd66d8cef803
SIZE (dnaio-1.2.0.tar.gz) = 58225
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools-scm>0 : devel/py-setuptools-scm@py39
- py39-wheel>=0 : devel/py-wheel@py39
- cython-3.9 : lang/cython@py39
- python3.9 : lang/python39
- py39-build>=0 : devel/py-build@py39
- py39-installer>=0 : devel/py-installer@py39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- python3.9 : lang/python39
- This port is required by:
- for Run
-
- biology/py-cutadapt
Configuration Options:
- No options to configure
- Options name:
- biology_py-dnaio
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|