| Port details on branch 2022Q2 |
- py-dna-features-viewer Python library to visualize DNA features, e.g. GenBank or Gff files
- 3.1.3 biology
 =0      3.1.3Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2022-02-03 12:42:05
- Last Update: 2023-11-04 22:11:34
- Commit Hash: ff7ea94
- Also Listed In: python
- License: MIT
- WWW:
- https://pypi.python.org/project/dna-features-viewer/
- Description:
- DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.
DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}dna-features-viewer>0:biology/py-dna-features-viewer@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-dna-features-viewer/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-dna-features-viewer
- pkg install py39-dna-features-viewer
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-dna-features-viewer listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-dna-features-viewer
- Package flavors (<flavor>: <package>)
- py39: py39-dna-features-viewer
- distinfo:
- TIMESTAMP = 1698839049
SHA256 (dna_features_viewer-3.1.3.tar.gz) = 7af179ab1b3c0dedd09e9e667cbd0fb804721ecbfc0cb4d0dda8a165437b3919
SIZE (dna_features_viewer-3.1.3.tar.gz) = 40331
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-matplotlib>=3 : math/py-matplotlib@py39
- py39-biopython>0 : biology/py-biopython@py39
- py39-bcbio-gff>0 : biology/py-bcbio-gff@py39
- py39-packaging>0 : devel/py-packaging@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_py-dna-features-viewer
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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