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non port: biology/py-deeptools/Makefile

Number of commits found: 5

Monday, 19 Jun 2023
12:09 Jason W. Bacon (jwb) search for other commits by this committer
biology/py-deeptools: Update to 3.5.2

Numerous enhancements and bug fixes
Changes: https://github.com/deeptools/deepTools/releases
commit hash: e24fe4fd0e0b43282c234e1fccbf681c3aaf90a8 commit hash: e24fe4fd0e0b43282c234e1fccbf681c3aaf90a8 commit hash: e24fe4fd0e0b43282c234e1fccbf681c3aaf90a8 commit hash: e24fe4fd0e0b43282c234e1fccbf681c3aaf90a8 e24fe4f
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Wednesday, 11 Jan 2023
15:58 Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 77d6847
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Thursday, 14 Oct 2021
11:51 Jason W. Bacon (jwb) search for other commits by this committer
biology/py-deeptools: User-friendly tools for exploring deep-sequencing data

deepTools contains useful modules to process the mapped reads data for
multiple quality checks, creating normalized coverage files in standard
bedGraph and bigWig file formats, that allow comparison between
different files (for example, treatment and control). Finally, using
such normalized and standardized files, deepTools can create many
publication-ready visualizations to identify enrichments and for
functional annotations of the genome.
commit hash: 799d4cc2cfd1c343f486afbde5cc735ec206de2e commit hash: 799d4cc2cfd1c343f486afbde5cc735ec206de2e commit hash: 799d4cc2cfd1c343f486afbde5cc735ec206de2e commit hash: 799d4cc2cfd1c343f486afbde5cc735ec206de2e 799d4cc

Number of commits found: 5