Port details on branch 2022Q2 |
- py-deeptools User-friendly tools for exploring deep-sequencing data
- 3.5.2 biology =0 3.5.2Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2021-10-14 11:57:05
- Last Update: 2023-06-19 12:09:17
- Commit Hash: e24fe4f
- Also Listed In: python
- License: BSD3CLAUSE
- WWW:
- https://github.com/deeptools/deepTools
- Description:
- deepTools contains useful modules to process the mapped reads data for
multiple quality checks, creating normalized coverage files in standard
bedGraph and bigWig file formats, that allow comparison between
different files (for example, treatment and control). Finally, using
such normalized and standardized files, deepTools can create many
publication-ready visualizations to identify enrichments and for
functional annotations of the genome.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}deepTools>0:biology/py-deeptools@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-deeptools/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-deeptools
- pkg install py39-deepTools
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-deepTools listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-deepTools
- Package flavors (<flavor>: <package>)
- distinfo:
- TIMESTAMP = 1687035894
SHA256 (deepTools-3.5.2.tar.gz) = 9367f9037b1822b7d69d5abaf47ca25bf0e5dc4cb8be85bd55b6f63c90781941
SIZE (deepTools-3.5.2.tar.gz) = 203152
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.16,1<1.25,1 : math/py-numpy@py39
- py39-scipy>=0.17.0 : science/py-scipy@py39
- py39-matplotlib>=3.3.0 : math/py-matplotlib@py39
- py39-pysam>=0.14.0 : biology/py-pysam@py39
- py39-py2bit>=0.3.0 : biology/py-py2bit@py39
- py39-numpydoc>=0.5 : textproc/py-numpydoc@py39
- py39-pyBigWig>=0.3.18 : biology/py-pybigwig@py39
- py39-plotly>=4.9 : graphics/py-plotly@py39
- py39-deeptoolsintervals>=0.1.8 : biology/py-deeptoolsintervals@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:
- No options to configure
- Options name:
- biology_py-deeptools
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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