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non port: biology/py-biopython/Makefile

Number of commits found: 71

Monday, 8 Apr 2024
02:29 Wen Heping (wen) search for other commits by this committer
biology/py-biopython: Update to 1.83

PR:		277979
Reported by:	wen@
Approved by:	maintainer
commit hash: e406b540f32c7b5fca2680c92b22c6b014bdc260 commit hash: e406b540f32c7b5fca2680c92b22c6b014bdc260 commit hash: e406b540f32c7b5fca2680c92b22c6b014bdc260 commit hash: e406b540f32c7b5fca2680c92b22c6b014bdc260 e406b54
Tuesday, 27 Jun 2023
19:34 Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb 3d9a815
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Thursday, 9 Mar 2023
22:13 Wen Heping (wen) search for other commits by this committer
biology/py-biopython: Update to 1.81

PR:		269995
Reported by:	wen@
Approved by:	maintainer
commit hash: 191db1b73f2c6aff2f0aa8e1aab60049a0683e98 commit hash: 191db1b73f2c6aff2f0aa8e1aab60049a0683e98 commit hash: 191db1b73f2c6aff2f0aa8e1aab60049a0683e98 commit hash: 191db1b73f2c6aff2f0aa8e1aab60049a0683e98 191db1b
Monday, 5 Dec 2022
11:45 Wen Heping (wen) search for other commits by this committer
biology/py-biopython: Update to 1.80

PR:		268106
Reported by:	wen@
Approved by:	maintainer
commit hash: db114d7fa3383f014a4d6a26cbf3b3d6b0ba5b2b commit hash: db114d7fa3383f014a4d6a26cbf3b3d6b0ba5b2b commit hash: db114d7fa3383f014a4d6a26cbf3b3d6b0ba5b2b commit hash: db114d7fa3383f014a4d6a26cbf3b3d6b0ba5b2b db114d7
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 12 Oct 2021
06:43 Wen Heping (wen) search for other commits by this committer
biology/py-biopython: Update to 1.79

PR:		259046
Reported by:	wen@
Approved by:	maintainer
commit hash: 112c183adcabae0c499ce9ab723826c9ab407294 commit hash: 112c183adcabae0c499ce9ab723826c9ab407294 commit hash: 112c183adcabae0c499ce9ab723826c9ab407294 commit hash: 112c183adcabae0c499ce9ab723826c9ab407294 112c183
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Friday, 16 Oct 2020
19:12 jwb search for other commits by this committer
biology/py-biopython: Upgrade to 1.78

Eliminates Bio.Alphabet
Other minor improvements

PR:             ports/250324
Submitted by:   Mauricio Herrera Cuadra
Original commitRevision:552519 
Saturday, 13 Jun 2020
13:42 jwb search for other commits by this committer
biology/py-biopython: Set python requirement to 3.6+

New requirement for v1.77 overlooked during upgrade
Original commitRevision:538671 
Friday, 29 May 2020
02:03 jwb search for other commits by this committer
biology/py-biopython: Upgrade to 1.77

Upstream support for python 3

PR:             ports/246763
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Original commitRevision:536875 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Saturday, 22 Dec 2018
04:54 wen search for other commits by this committer
- Update to 1.73

PR:		234154
Submitted by:	wenheping2000@hotmail.com(myself)
Approved by:	maintainer
Original commitRevision:488064 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Friday, 24 Aug 2018
00:12 wen search for other commits by this committer
- Update to 1.72

PR:		230723
Submitted by:	wen@(myself)
Approved by:	maintainer
Original commitRevision:477931 
Wednesday, 20 Jun 2018
17:05 mat search for other commits by this committer
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
Original commitRevision:472884 
Sunday, 13 May 2018
22:30 yuri search for other commits by this committer
biology/py-biopython: Unbreak on python3; Add license

Two items prevented python3 compatibility:
* Breakage of ASCII codec due to non-ascii characters in README:
https://github.com/biopython/biopython/issues/1649
* The outdated dependency: print/py-reportlab1 instead of the modern version 3.X
print/py-reportlab

Port changes:
* USES=python:2.7 -> USES=python
* Add pre-configure that clears the README file
* Add LICENSE/LICENSE_FILE

Testing:
* Ran the tutorial testcase
http://biopython.org/DIST/docs/tutorial/Tutorial.html,
  particularly pdf writing through print/py-reportlab worked fine.

Asked the upstream to clarify the acceptable dependency version:
https://github.com/biopython/biopython/issues/1650

Approved by:	portmgr blanket (unbreak for python3; add license)
Original commitRevision:469835 
Monday, 9 Apr 2018
06:26 wen search for other commits by this committer
- Update to 1.71

Approved by:	mauricio@arareko.net(maintainer, via email)
Original commitRevision:466835 
Saturday, 10 Mar 2018
17:46 gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Original commitRevision:464084 
Monday, 19 Feb 2018
11:10 antoine search for other commits by this committer
Reduce dependency on the python2 metaport

PR:		225752
Submitted by:	Yasuhiro KIMURA
Original commitRevision:462307 
Thursday, 30 Nov 2017
15:50 mat search for other commits by this committer
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
  current python flavor.  It can be used in dependency lines when the
  port itself is not python flavored.  For example, deskutils/calibre.

  By default, all the flavors are generated.  To only generate flavors
  for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
  BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.

  In all the ports with Python dependencies, the *_DEPENDS entries MUST
  end with the flavor so that the framework knows which to build/use.
  This is done by appending '@${PY_FLAVOR}' after the origin (or
  @${FLAVOR} if in a Python module with Python flavors, as the content
  will be the same).  For example:

    RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}

PR:		223071
Reviewed by:	portmgr, python
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D12464
Original commitRevision:455210 
Friday, 18 Aug 2017
12:57 wen search for other commits by this committer
- update to 1.70

PR:		221443
Submitted by:	wen@(myself)
Approved by:	maintainer
Original commitRevision:448228 
Wednesday, 3 May 2017
12:39 wen search for other commits by this committer
- Update to 1.69

PR:		218903
Submitted by:	wen@
Approved by:	maintainer
Original commitRevision:440010 
Friday, 23 Sep 2016
01:54 wen search for other commits by this committer
- Update to 1.68

PR:		212874
Submitted by:	wen@(myself)
Approved by:	maintainer
Original commitRevision:422643 
Sunday, 17 Apr 2016
03:55 wen search for other commits by this committer
- Update to 1.66

PR:		208825
Submitted by:	wen@
Approved by:	maintainer
Original commitRevision:413489 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Wednesday, 5 Aug 2015
10:32 mat search for other commits by this committer
Update to 1.65.

PR:		201888
Submitted by:	brueffer
Approved by:	maintainer
Sponsored by:	Absolight
Original commitRevision:393576 
Monday, 19 Jan 2015
20:21 makc search for other commits by this committer
biology/py-biopython:
- Convert to options framework

Approved by:	portmgr blanket
Original commitRevision:377466 
Sunday, 19 Oct 2014
07:38 mva search for other commits by this committer
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Original commitRevision:371171 
Wednesday, 10 Sep 2014
20:50 gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Original commitRevision:367888 
Sunday, 27 Apr 2014
01:59 swills search for other commits by this committer
- Stage
- Drop easy_install
- Use auto pkg-plist
- Delete pkg-plist

PR:		ports/188818
Submitted by:	Bartek Rutkowski <ports@robakdesign.com>
Approved by:	portmgr@ (blanket)
Original commitRevision:352389 
Monday, 10 Mar 2014
20:55 gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Original commitRevision:347809 
Tuesday, 25 Feb 2014
12:44 tota search for other commits by this committer
- Repocopy print/py-reportlab to print/py-reportlab1
  to preserve version 1.x and to update to 3.0

  print/py-reportlab:
    - Update print/py-reportlab to 3.0 based on print/py-reportlab2
    - Support STAGEDIR
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Set CONFLICTS
    - Add PORTSCOUT
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab1:
    - Support STAGEDIR
    - Add PKGNAMESUFFIX not to duplicate ports with the same name
    - Set CONFLICTS
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Make use of PORTDOCS
    - Set OPTIONS_DEFINE explicitly
    - Fix include statement
    - Make docs unconditional to stage
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab2:
    - Update CONFLICTS
    - Set PORTSCOUT

  dependent ports:
    - Switch dependency from print/py-reportlab to print/py-reportlab1
      * biology/py-biopython
      * deskutils/gourmet
      * deskutils/griffith
      * games/pythonsudoku
      * misc/pdfmap
      * print/py-trml2pdf
      * www/py-satchmo

PR:		ports/186970
Submitted by:	tota (myself)
Approved by:	Muhammad Moinur Rahman (maintainer)
Original commitRevision:345987 
Monday, 13 Jan 2014
21:00 rene search for other commits by this committer
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Original commitRevision:339634 
Saturday, 26 Oct 2013
00:52 gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
Original commitRevision:331644 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Tuesday, 25 Sep 2012
08:06 rm search for other commits by this committer
- update to 1.60

while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
Original commitRevision:304822 
Tuesday, 6 Mar 2012
06:40 wen search for other commits by this committer
- Update to 1.59

PR:             ports/165582
Submitted by:   wen@ (myself)
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via
email)
Original commit
Tuesday, 24 May 2011
09:06 wen search for other commits by this committer
- Update to 1.57

PR:             ports/156329
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Original commit
Thursday, 24 Feb 2011
23:25 miwi search for other commits by this committer
- Move over to python2.5 or higher
- While here kick md5
Original commit
Friday, 2 Jul 2010
02:57 wen search for other commits by this committer
- Update to 1.54

PR:             ports/148274
Submitted by:   Ju Pengfei <jupengfei@gmail.com>
Approved by:    maintainer
Feature safe:   yes
Original commit
Wednesday, 6 Jan 2010
00:29 wen search for other commits by this committer
- Update to 1.53

PR:             ports/142221
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Original commit
Friday, 4 Sep 2009
20:41 miwi search for other commits by this committer
- Update to 138038

PR:             138038
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
Saturday, 11 Oct 2008
15:26 miwi search for other commits by this committer
- Update to 1.48

PR:             127776
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
Monday, 11 Aug 2008
22:06 miwi search for other commits by this committer
- Update to 1.47

PR:             125912
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer timeout
Original commit
Friday, 4 Jul 2008
02:53 beech search for other commits by this committer
- Update to 1.45

PR:             ports/125134
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer)
Original commit
Thursday, 31 May 2007
03:49 miwi search for other commits by this committer
- Fix typos.

Reported by:    stas@
Original commit
Wednesday, 30 May 2007
06:57 miwi search for other commits by this committer
- Update to 1.43

PR:             111817
Submitted by:   "P.BandieraPaiva" <paiva@unifesp.br>
Approved by:    maintainer
Original commit
Tuesday, 31 Oct 2006
13:25 miwi search for other commits by this committer
- Update to 1.42

PR:             ports/104635
Submitted by:   Thomas Abthorpe <thomas@goodking.ca>
Approved by:    maintainer
Original commit
Friday, 11 Nov 2005
01:15 mnag search for other commits by this committer
Update to 1.41
Take MAINTAINER
Add SHA256

PR:             88792
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Original commit
Saturday, 20 Nov 2004
08:09 linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Original commit
Wednesday, 27 Oct 2004
20:39 pav search for other commits by this committer
- Update to 1.30

PR:             ports/71400
Submitted by:   Stefan Walter <sw@gegenunendlich.de>
Approved by:    maintainer timeout (2 months)
Original commit
Friday, 2 Jul 2004
08:20 kris search for other commits by this committer
BROKEN: Does not build
Original commit
Monday, 9 Feb 2004
21:40 des search for other commits by this committer
Upgrade to 1.23.

Approved by:    maintainer timeout
Original commit
Thursday, 20 Nov 2003
15:06 trevor search for other commits by this committer
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:   Oliver Eikemeier
Original commit
13:51 trevor search for other commits by this committer
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.
Original commit
Thursday, 13 Nov 2003
14:45 trevor search for other commits by this committer
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Monday, 15 Jul 2002
11:37 tg search for other commits by this committer
Use $PYNUMERIC in the dependencies.
Original commit
Tuesday, 22 Jan 2002
10:54 wjv search for other commits by this committer
- Update to version 1.00a4    
Original commit
Tuesday, 2 Oct 2001
09:31 wjv search for other commits by this committer
- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0   - If
CORBA support is included, the default ORB has changed from omniORB to     ORBit
  - PORTREVISION bump    
Original commit
Thursday, 6 Sep 2001
13:42 wjv search for other commits by this committer
- Update to version 1.00.a3   - Use pkg-req to check the installed version of
Python    
Original commit
Monday, 9 Jul 2001
10:57 wjv search for other commits by this committer
Update to version 1.00.a2    
Original commit
Friday, 29 Jun 2001
16:04 wjv search for other commits by this committer
Use $FILESDIR rather than hard-coded path.    
Original commit
Friday, 15 Jun 2001
14:25 wjv search for other commits by this committer
Update to 1.00.a1; change MAINTAINER to my new address.   Many changes to port,
including addition of CORBA functionality.    
Original commit
Tuesday, 29 May 2001
13:50 sobomax search for other commits by this committer
math/numpy was renamed to math/py-numeric.    
Original commit
Monday, 11 Sep 2000
15:56 nbm search for other commits by this committer
Update to 0.90.d03    
Original commit
Friday, 8 Sep 2000
13:24 tg search for other commits by this committer
Don't break package building on Satoshi's cluster. Explicitly depend   on
python1.5:lang/python15.    
Original commit
Saturday, 5 Aug 2000
17:01 will search for other commits by this committer
Upgrade to 0.90.d02.    
Original commit
Monday, 31 Jul 2000
13:12 nbm search for other commits by this committer
Add py-biopython, is a collection of Python packages and modules created   by
the Biopython Project, intended to provide the basis for building  
bioinformatics applications in the Python language.    
Original commit

Number of commits found: 71