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Port details
py-PySCeS Python Simulator for Cellular Systems
1.2.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-08-17 21:33:11
Last Update: 2024-05-26 21:57:06
Commit Hash: 9997daa
Also Listed In: python
License: BSD3CLAUSE
WWW:
https://pysces.github.io/
Description:
PySCeS provides a variety of tools for the analysis of cellular systems.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • ${PYTHON_PKGNAMEPREFIX}pysces>0:biology/py-PySCeS@${PY_FLAVOR}
To install the port:
cd /usr/ports/biology/py-PySCeS/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/py-PySCeS
  • pkg install py39-pysces
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
NOTE: This is a Python port. Instead of py39-pysces listed in the above command, you can pick from the names under the Packages section.
PKGNAME: py39-pysces
Package flavors (<flavor>: <package>)
  • py39: py39-pysces
distinfo:
TIMESTAMP = 1716746850 SHA256 (pysces-1.2.1.tar.gz) = 5dbde64cf398c599f5303d9ce084a50e047080c0899951529774a822a549fc20 SIZE (pysces-1.2.1.tar.gz) = 2753986

Packages (timestamps in pop-ups are UTC):
py39-PySCeS
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.1.11.1.1--1.1.1---
FreeBSD:13:quarterly1.1.11.1.1--1.1.1-1.1.1-
FreeBSD:14:latest1.1.11.1.1------
FreeBSD:14:quarterly1.1.11.1.1--1.1.1-1.1.1-
FreeBSD:15:latest1.1.11.1.1n/a-n/a-1.1.1-
 

py39-pysces
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest--------
FreeBSD:13:quarterly--------
FreeBSD:14:latest----1.2.1---
FreeBSD:14:quarterly--------
FreeBSD:15:latest--n/a-n/a---
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py39-meson-python>0 : devel/meson-python@py39
  2. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  3. gfortran13 : lang/gcc13
  4. python3.9 : lang/python39
  5. as : devel/binutils
  6. py39-build>=0 : devel/py-build@py39
  7. py39-installer>=0 : devel/py-installer@py39
Test dependencies:
  1. py39-pytest>=7,1 : devel/py-pytest@py39
  2. python3.9 : lang/python39
Runtime dependencies:
  1. py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
  2. py39-matplotlib>0 : math/py-matplotlib@py39
  3. py39-scipy>0 : science/py-scipy@py39
  4. py39-python-libsbml>0 : biology/py-python-libsbml@py39
  5. gfortran13 : lang/gcc13
  6. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_py-PySCeS
USES:
fortran localbase:ldflags python
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. https://files.pythonhosted.org/packages/source/p/pysces/
  2. https://pypi.org/packages/source/p/pysces/
Collapse this list.

Number of commits found: 15

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
1.2.1
26 May 2024 21:57:06
commit hash: 9997daa4794629faced65dbd8f0b1d49ab7bcdfacommit hash: 9997daa4794629faced65dbd8f0b1d49ab7bcdfacommit hash: 9997daa4794629faced65dbd8f0b1d49ab7bcdfacommit hash: 9997daa4794629faced65dbd8f0b1d49ab7bcdfa files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: update 1.1.1 → 1.2.1

Reported by:	portscout
1.1.1
14 Dec 2023 08:43:06
commit hash: 6adf2325e974a50a3a721094c606273837cc8ec0commit hash: 6adf2325e974a50a3a721094c606273837cc8ec0commit hash: 6adf2325e974a50a3a721094c606273837cc8ec0commit hash: 6adf2325e974a50a3a721094c606273837cc8ec0 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Fix build by adding USES=localbase:ldflags

Reported by:	fallout
1.1.1
26 Jul 2023 06:20:25
commit hash: 3cea739c6a87a9c4d4d85d4c9f30632d7d8abe27commit hash: 3cea739c6a87a9c4d4d85d4c9f30632d7d8abe27commit hash: 3cea739c6a87a9c4d4d85d4c9f30632d7d8abe27commit hash: 3cea739c6a87a9c4d4d85d4c9f30632d7d8abe27 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 1.1.0 → 1.1.1

Reported by:	portscout
1.1.0
26 Jun 2023 15:53:04
commit hash: f5ec08319cbb48fedc50fc5dc91fda39d9a4c119commit hash: f5ec08319cbb48fedc50fc5dc91fda39d9a4c119commit hash: f5ec08319cbb48fedc50fc5dc91fda39d9a4c119commit hash: f5ec08319cbb48fedc50fc5dc91fda39d9a4c119 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 1.0.3 → 1.1.0

Reported by:	portscout
1.0.3_1
23 Apr 2023 09:09:58
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5bcommit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b files touched by this commit
Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
1.0.3
11 Jan 2023 15:58:34
commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656commit hash: 77d68471aded6907dbbcb5ef50d557e4c69db656 files touched by this commit
Dmitry Marakasov (amdmi3) search for other commits by this committer
*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt
1.0.3
26 Sep 2022 08:18:31
commit hash: fdebc5b7b2eb21430f474c42198869e82faf059ecommit hash: fdebc5b7b2eb21430f474c42198869e82faf059ecommit hash: fdebc5b7b2eb21430f474c42198869e82faf059ecommit hash: fdebc5b7b2eb21430f474c42198869e82faf059e files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 1.0.2 -> 1.0.3

Reported by:	portscout
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.0.2
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.0.2
20 May 2022 22:02:59
commit hash: 8b4b845a5189060785ac47d3e95a913d896e7641commit hash: 8b4b845a5189060785ac47d3e95a913d896e7641commit hash: 8b4b845a5189060785ac47d3e95a913d896e7641commit hash: 8b4b845a5189060785ac47d3e95a913d896e7641 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 1.0.1 -> 1.0.2

Reported by:	portscout
1.0.1
02 Mar 2022 18:49:25
commit hash: ebbccfc73c27e29ee6c66d34494b6c2c6be37c82commit hash: ebbccfc73c27e29ee6c66d34494b6c2c6be37c82commit hash: ebbccfc73c27e29ee6c66d34494b6c2c6be37c82commit hash: ebbccfc73c27e29ee6c66d34494b6c2c6be37c82 files touched by this commit
Thierry Thomas (thierry) search for other commits by this committer
biology/py-PySCeS: fix with Python ≠ 3.8

PR:		262304
Approved by:	yuri (maintainer)
1.0.1
25 Feb 2022 19:35:50
commit hash: 7604abe7de073f93ef6a21723316366675abb285commit hash: 7604abe7de073f93ef6a21723316366675abb285commit hash: 7604abe7de073f93ef6a21723316366675abb285commit hash: 7604abe7de073f93ef6a21723316366675abb285 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 1.0.0 -> 1.0.1

Reported by:	portscout
1.0.0
20 Sep 2021 21:34:22
commit hash: 01e5dfaad785f91e5b4f17b6d472969cb97f0640commit hash: 01e5dfaad785f91e5b4f17b6d472969cb97f0640commit hash: 01e5dfaad785f91e5b4f17b6d472969cb97f0640commit hash: 01e5dfaad785f91e5b4f17b6d472969cb97f0640 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 0.9.8a -> 1.0.0
0.9.8.a
14 Sep 2021 09:21:07
commit hash: e53b99b2dccf0e63a0a7441e8cf0edae254265d0commit hash: e53b99b2dccf0e63a0a7441e8cf0edae254265d0commit hash: e53b99b2dccf0e63a0a7441e8cf0edae254265d0commit hash: e53b99b2dccf0e63a0a7441e8cf0edae254265d0 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: Update 0.9.8post1 -> 0.9.8a
0.9.8.p1
17 Aug 2021 21:30:08
commit hash: 1c0e78eb4b2833ec20fb0addbb001e1e99235982commit hash: 1c0e78eb4b2833ec20fb0addbb001e1e99235982commit hash: 1c0e78eb4b2833ec20fb0addbb001e1e99235982commit hash: 1c0e78eb4b2833ec20fb0addbb001e1e99235982 files touched by this commit
Yuri Victorovich (yuri) search for other commits by this committer
biology/py-PySCeS: New port: Python Simulator for Cellular Systems

Number of commits found: 15