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non port: biology/pooler/distinfo

Number of commits found: 9

Sunday, 10 Sep 2023
13:06 Jason W. Bacon (jwb) search for other commits by this committer
biology/pooler: Update to 1.88

Fix infinite loop

Changes: https://ssb22.user.srcf.net/pooler/#changes

PR:             273604
Reported by:    silas-freebsd@flatline.org.uk
commit hash: 8abd028788bc719acea0697bb74f48894202e720 commit hash: 8abd028788bc719acea0697bb74f48894202e720 commit hash: 8abd028788bc719acea0697bb74f48894202e720 commit hash: 8abd028788bc719acea0697bb74f48894202e720 8abd028
Monday, 19 Dec 2022
07:56 Fernando ApesteguĂ­a (fernape) search for other commits by this committer Author: Silas S. Brown
biology/pooler: update to 1.86

ChangeLog:
https://github.com/ssb22/PrimerPooler/commit/0d2b55459d0689ad505a34fe54d2d7214890b13d

 * fix spurious memory error on M1 Mac

PR:		268445
Reported by:	silas-freebsd@flatline.org.uk (maintainer)
commit hash: a75fab4072ee1d5d0c5f8240986c016f123a97fd commit hash: a75fab4072ee1d5d0c5f8240986c016f123a97fd commit hash: a75fab4072ee1d5d0c5f8240986c016f123a97fd commit hash: a75fab4072ee1d5d0c5f8240986c016f123a97fd a75fab4
Tuesday, 12 Jul 2022
12:47 Jason W. Bacon (jwb) search for other commits by this committer
biology/pooler: Update to 1.85

Change default annealing temperature from 37C to 45C

PR:             265163
Reported by:    silas-freebsd@flatline.org.uk
commit hash: bcc206f2be0cca24bf8688ab6d81c351ccbc98d3 commit hash: bcc206f2be0cca24bf8688ab6d81c351ccbc98d3 commit hash: bcc206f2be0cca24bf8688ab6d81c351ccbc98d3 commit hash: bcc206f2be0cca24bf8688ab6d81c351ccbc98d3 bcc206f
Monday, 14 Mar 2022
14:41 Jason W. Bacon (jwb) search for other commits by this committer
biology/pooler: Update to 1.84

Bug fix for high core-count machines

PR:             232454
Reported by:    silas-freebsd@flatline.org.uk
commit hash: 3b861fa65fe8386404132158eb153378007483bf commit hash: 3b861fa65fe8386404132158eb153378007483bf commit hash: 3b861fa65fe8386404132158eb153378007483bf commit hash: 3b861fa65fe8386404132158eb153378007483bf 3b861fa
Thursday, 10 Feb 2022
14:23 Fernando ApesteguĂ­a (fernape) search for other commits by this committer
biology/pooler: update to 1.82

ChangeLog: http://ssb22.user.srcf.net/pooler/#changes

PR:	261741
Reported by:	silas-freebsd@flatline.org.uk
commit hash: 8d34513c3f7ac851134d8452109c28497f0442cb commit hash: 8d34513c3f7ac851134d8452109c28497f0442cb commit hash: 8d34513c3f7ac851134d8452109c28497f0442cb commit hash: 8d34513c3f7ac851134d8452109c28497f0442cb 8d34513
Saturday, 28 Aug 2021
14:35 Jason W. Bacon (jwb) search for other commits by this committer
biology/pooler: Update to 1.78

Adds desktop file

PR:             258120
Reported by:    Silas S. Brown <silas-freebsd@flatline.org.uk>
commit hash: 541454f9939d3836bc1bcf642f8c748a1d04bb80 commit hash: 541454f9939d3836bc1bcf642f8c748a1d04bb80 commit hash: 541454f9939d3836bc1bcf642f8c748a1d04bb80 commit hash: 541454f9939d3836bc1bcf642f8c748a1d04bb80 541454f
Saturday, 21 Aug 2021
22:12 Jason W. Bacon (jwb) search for other commits by this committer
biology/pooler: Update to 1.77

Minor fixes and enhancements.

Reported by:    silas-freebsd@flatline.org.uk
commit hash: 472c25aa5d8dc3268fc5476b53100872d1900467 commit hash: 472c25aa5d8dc3268fc5476b53100872d1900467 commit hash: 472c25aa5d8dc3268fc5476b53100872d1900467 commit hash: 472c25aa5d8dc3268fc5476b53100872d1900467 472c25a
Friday, 8 Jan 2021
22:44 jwb search for other commits by this committer
biology/pooler: Upgrade to 1.76

Fixes race condition for make jobs in upstream Makefile

PR:             252352
Submitted by:   silas-freebsd@flatline.org.uk
Original commitRevision:560817 
Sunday, 15 Nov 2020
18:50 jwb search for other commits by this committer
biology/pooler: Optimise DNA sequencing primer-set combinations

Optimise combinations of primers and minimise the formation of dimers in
multiplexed PCR.

Primer Pooler can:

* Check through each proposed pool for combinations that are likely to form
  dimers

* Automatically move prospective amplicons between proposed pools to reduce
  dimer formation

* Automatically search the genome sequence to find which amplicons overlap, and
  place their corresponding primers in separate pools
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Original commitRevision:555418 

Number of commits found: 9