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SVNWeb
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Number of commits found: 15 |
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Sun, 10 Sep 2023
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[ 13:06 Jason W. Bacon (jwb)  ]    8abd028
biology/pooler: Update to 1.88
Fix infinite loop
Changes: https://ssb22.user.srcf.net/pooler/#changes
PR: 273604
Reported by: silas-freebsd@flatline.org.uk
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Mon, 19 Dec 2022
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[ 07:56 Fernando Apesteguía (fernape) Author: Silas S. Brown ] a75fab4
biology/pooler: update to 1.86
ChangeLog:
https://github.com/ssb22/PrimerPooler/commit/0d2b55459d0689ad505a34fe54d2d7214890b13d
* fix spurious memory error on M1 Mac
PR: 268445
Reported by: silas-freebsd@flatline.org.uk (maintainer)
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Tue, 12 Jul 2022
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[ 12:47 Jason W. Bacon (jwb) ] bcc206f
biology/pooler: Update to 1.85
Change default annealing temperature from 37C to 45C
PR: 265163
Reported by: silas-freebsd@flatline.org.uk
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Wed, 27 Apr 2022
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[ 13:22 Piotr Kubaj (pkubaj) ] eaf43a2
biology/pooler: use openmp only when omp.h is present
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Mon, 14 Mar 2022
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[ 14:41 Jason W. Bacon (jwb) ] 3b861fa
biology/pooler: Update to 1.84
Bug fix for high core-count machines
PR: 232454
Reported by: silas-freebsd@flatline.org.uk
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Thu, 10 Feb 2022
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[ 14:23 Fernando Apesteguía (fernape) ] 8d34513
biology/pooler: update to 1.82
ChangeLog: http://ssb22.user.srcf.net/pooler/#changes
PR: 261741
Reported by: silas-freebsd@flatline.org.uk
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Wed, 6 Oct 2021
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[ 20:52 Piotr Kubaj (pkubaj) ] 0716ab6
biology/pooler: fix build on powerpc
In file included from bit-common.c:63:
In file included from ./bit-choice.h:23:
In file included from ./triangle.h:44:
./openmp.h:19:10: fatal error: 'omp.h' file not found
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Sun, 3 Oct 2021
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[ 17:47 Fernando Apesteguía (fernape) ] 07fb2d5 (Only the first 10 of 14 ports in this commit are shown above. )
*/*: Remove compiler:openmp from Mk/Uses/compiler.mk
The option implied a dependency on gcc but clang got openmp support long ago.
Remove compiler:openmp from Mk/Uses/compiler.mk
For ports using USE=compiler:openmp, just remove it and make them build with
clang.
Fix conditionals when necessary
Bump PORTREVISION where appropriate
If problem arises, they can be addressed by using USE_GCC=yes
An update to the Porter's Handbook will follow.
Approved by: portmgr (bapt)
Differential Revision: https://reviews.freebsd.org/D31971
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Sat, 28 Aug 2021
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[ 14:35 Jason W. Bacon (jwb) ] 541454f
biology/pooler: Update to 1.78
Adds desktop file
PR: 258120
Reported by: Silas S. Brown <silas-freebsd@flatline.org.uk>
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Sat, 21 Aug 2021
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[ 22:12 Jason W. Bacon (jwb) ] 472c25a
biology/pooler: Update to 1.77
Minor fixes and enhancements.
Reported by: silas-freebsd@flatline.org.uk
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Fri, 8 Jan 2021
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[ 22:44 jwb ]  
biology/pooler: Upgrade to 1.76
Fixes race condition for make jobs in upstream Makefile
PR: 252352
Submitted by: silas-freebsd@flatline.org.uk
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Sun, 15 Nov 2020
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[ 18:50 jwb ]
biology/pooler: Optimise DNA sequencing primer-set combinations
Optimise combinations of primers and minimise the formation of dimers in
multiplexed PCR.
Primer Pooler can:
* Check through each proposed pool for combinations that are likely to form
dimers
* Automatically move prospective amplicons between proposed pools to reduce
dimer formation
* Automatically search the genome sequence to find which amplicons overlap, and
place their corresponding primers in separate pools (Only the first 15 lines of the commit message are shown above )
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Number of commits found: 15 |
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