[ 08:55 ak  ]

• 370983 biology/phrap/distinfo
• 370983 databases/mantis/Makefile
• 370983 devel/allegro-devel/Makefile
• 370983 devel/gmake-lite/Makefile
• 370983 devel/gnustep/Makefile
• 370983 devel/libevent2/Makefile
• 370983 devel/php-memoize/Makefile
• 370983 devel/php-scalar_objects/Makefile
• 370983 devel/rubygem-sidekiq/Makefile
• 370983 finance/trytond28_company_work_time/Makefile

- Fix various distinfo errors
- Remove unused USE_* knobs
- Fix typos in USE_* knobs
- Remove empty lines after .include <bsd.port.mk>

Approved by:	portmgr (bapt)
Differential Revision:	https://reviews.freebsd.org/D911

[ 18:04 pi  ]

• 365765 biology/consed/Makefile
• 365765 biology/consed/distinfo
• 365765 biology/consed/files/patch-installConsed.perl
• 365765 biology/consed/files/patch-scripts_addReads2Consed.perl
• 365765 biology/consed/files/patch-scripts_determineReadTypes.perl
• 365765 biology/consed/files/patch-scripts_phredPhrap
• 365765 biology/consed/files/pkg-message.in
• 365765 biology/consed/pkg-plist.examples
• 365765 biology/phrap/Makefile
• 365765 biology/phrap/distinfo

update ports:
	biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)

[ 12:38 miwi  ]

• 1.4 astro/accrete/distinfo
• 1.6 astro/boinc-einsteinathome/distinfo
• 1.5 astro/boinc-milkyway/distinfo
• 1.9 astro/celestia/distinfo
• 1.4 astro/ephem/distinfo
• 1.2 astro/fowsr/distinfo
• 1.3 astro/gaia/distinfo
• 1.4 astro/gkrellmoon/distinfo
• 1.3 astro/gkrellmoon2/distinfo
• 1.4 astro/gkrellsun/distinfo

- Get Rid MD5 support

[ 07:03 edwin  ]

• 1.100 biology/Makefile
• 1.1 biology/phrap/Makefile
• 1.1 biology/phrap/distinfo
• 1.1 biology/phrap/files/patch-makefile
• 1.1 biology/phrap/pkg-descr

New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
        assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>