non port: biology/peak-classifier/Makefile |
Number of commits found: 15 |
Saturday, 2 Mar 2024
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19:37 Nuno Teixeira (eduardo)
biology/peak-classifier: Move man pages to share/man
Approved by: portmgr (blanket)
3312d5f9 |
Saturday, 28 Oct 2023
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11:38 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.4.13
Updates for new libxtend API
d6b521a |
Wednesday, 6 Sep 2023
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20:50 Po-Chuan Hsieh (sunpoet)
biology/peak-classifier: Clean up USES=python
Approved by: portmgr (blanket)
With hat: python
1d86601 |
Friday, 11 Aug 2023
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20:44 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.4.11
Updates for biolibc GFF3 API changes
9b09bd90 |
Tuesday, 27 Jun 2023
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19:34 Rene Ladan (rene)
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>
3d9a815 |
Saturday, 10 Jun 2023
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11:57 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.4.8
Updates for libxtend API
Minor fixes
55b91b1 |
Sunday, 23 Apr 2023
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09:09 Gerald Pfeifer (gerald)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020 |
Sunday, 11 Dec 2022
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20:09 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.4-5
Update for biolibc API changes
4b09e48 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Saturday, 11 Jun 2022
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14:26 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.4
Update for bl_gff_t API streamlining
Changes: https://github.com/auerlab/peak-classifier/tags
620c716 |
Tuesday, 15 Mar 2022
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21:41 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.3
Minor update for biolibc 0.2.2 API changes
aa7ea85 |
Tuesday, 14 Dec 2021
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19:45 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.2
Mainly updates for evolving libxtend and biolibc APIs
A few minor fixes and enhancements
084fcf0 |
Thursday, 2 Sep 2021
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23:15 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.1.21
Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
7e94c6d |
Saturday, 28 Aug 2021
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01:34 Jason W. Bacon (jwb)
biology/peak-classifier: Update to 0.1.1.20
Updates for libxtend and biolibc API changes
b16616b |
Monday, 14 Jun 2021
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16:40 Jason W. Bacon (jwb)
biology/peak-classifier: Classify peaks based on GFF features
Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
Peaks are provided in a BED file sorted by chromosome and position.
The GFF must be sorted by chromosome and position, with gene-level
features separated by ### tags and each gene organized into
subfeatures such as transcripts and exons. This is the default for
common data sources.
5a2a6eb |
Number of commits found: 15 |