| Port details on branch 2022Q2 |
- p5-BioPerl Collection of Perl modules for bioinformatics
- 1.007008 biology
 =0      1.007008Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
- Port Added: 2016-12-18 15:27:08
- Last Update: 2023-10-11 12:57:41
- Commit Hash: 0567b2d
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/dist/BioPerl
- https://bioperl.org/
- Description:
- The BioPerl Project is an international association of developers of open
source Perl tools for bioinformatics, genomics and life science research.
BioPerl is a collection of object-oriented Perl modules created by the
BioPerl Project. It forms the basis of a large number of bioinformatics and
genomics applications.
(For an interesting aside on "How Perl saved the Human Genome Project", see
http://www.bioperl.org/wiki/How_Perl_saved_human_genome)
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-BioPerl>0:biology/p5-BioPerl
- To install the port:
- cd /usr/ports/biology/p5-BioPerl/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-BioPerl
- pkg install p5-BioPerl
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-BioPerl
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1696904108
SHA256 (BioPerl-1.7.8.tar.gz) = c490a3be7715ea6e4305efd9710e5edab82dabc55fd786b6505b550a30d71738
SIZE (BioPerl-1.7.8.tar.gz) = 7527658
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-Data-Stag>=0 : devel/p5-Data-Stag
- p5-Error>=0 : lang/p5-Error
- p5-Graph>=0 : math/p5-Graph
- p5-HTTP-Message>=0 : www/p5-HTTP-Message
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IO-Stringy>=0 : devel/p5-IO-Stringy
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
- p5-Module-Build>=0 : devel/p5-Module-Build
- p5-Set-Scalar>=0 : devel/p5-Set-Scalar
- p5-Test-Most>=0 : devel/p5-Test-Most
- p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
- p5-URI>=0 : net/p5-URI
- p5-XML-DOM>=0 : textproc/p5-XML-DOM
- p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
- p5-XML-SAX>=0 : textproc/p5-XML-SAX
- p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
- p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- p5-XML-Writer>=0 : textproc/p5-XML-Writer
- p5-YAML>=0 : textproc/p5-YAML
- p5-libwww>=0 : www/p5-libwww
- p5-libxml>=0 : textproc/p5-libxml
- perl5>=5.34<5.35 : lang/perl5.34
- perl5>=5.34<5.35 : lang/perl5.34
- Test dependencies:
-
- p5-Test-Memory-Cycle>=0 : devel/p5-Test-Memory-Cycle
- p5-Test-Weaken>=0 : devel/p5-Test-Weaken
- Runtime dependencies:
-
- p5-Data-Stag>=0 : devel/p5-Data-Stag
- p5-Error>=0 : lang/p5-Error
- p5-Graph>=0 : math/p5-Graph
- p5-HTTP-Message>=0 : www/p5-HTTP-Message
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IO-Stringy>=0 : devel/p5-IO-Stringy
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
- p5-Module-Build>=0 : devel/p5-Module-Build
- p5-Set-Scalar>=0 : devel/p5-Set-Scalar
- p5-Test-Most>=0 : devel/p5-Test-Most
- p5-Test-RequiresInternet>=0 : devel/p5-Test-RequiresInternet
- p5-URI>=0 : net/p5-URI
- p5-XML-DOM>=0 : textproc/p5-XML-DOM
- p5-XML-LibXML>=0 : textproc/p5-XML-LibXML
- p5-XML-SAX>=0 : textproc/p5-XML-SAX
- p5-XML-SAX-Base>=0 : textproc/p5-XML-SAX-Base
- p5-XML-SAX-Writer>=0 : textproc/p5-XML-SAX-Writer
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- p5-XML-Writer>=0 : textproc/p5-XML-Writer
- p5-YAML>=0 : textproc/p5-YAML
- p5-libwww>=0 : www/p5-libwww
- p5-libxml>=0 : textproc/p5-libxml
- perl5>=5.34<5.35 : lang/perl5.34
- This port is required by:
- for Build
-
- biology/p5-Bio-ASN1-EntrezGene
- biology/p5-Bio-Cluster
- biology/p5-Bio-Coordinate
- biology/p5-Bio-DB-EMBL
- biology/p5-Bio-DB-NCBIHelper
- biology/p5-Bio-Das
- biology/p5-Bio-FeatureIO
- for Run
-
- biology/p5-Bio-ASN1-EntrezGene
- biology/p5-Bio-Cluster
- biology/p5-Bio-Coordinate
- biology/p5-Bio-DB-EMBL
- biology/p5-Bio-DB-NCBIHelper
- biology/p5-Bio-Das
- biology/p5-Bio-FeatureIO
Configuration Options:- ===> The following configuration options are available for p5-BioPerl-1.007008:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
- Options name:
- biology_p5-BioPerl
- USES:
- perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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