| Port details on branch 2022Q2 |
- p5-BioPerl-Run Wrapper modules for common bioinformatics tools
- 1.007003 biology
 =0      1.007003Version of this port present on the latest quarterly branch. - Maintainer: sunpoet@FreeBSD.org
- Port Added: 2016-12-18 15:29:01
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://github.com/bioperl/bioperl-run
- Description:
- Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-BioPerl-Run>0:biology/p5-BioPerl-Run
- To install the port:
- cd /usr/ports/biology/p5-BioPerl-Run/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-BioPerl-Run
- pkg install p5-BioPerl-Run
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-BioPerl-Run
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1549711722
SHA256 (BioPerl-Run-1.007003.tar.gz) = e62e529352f0644bc26509065595d0a47fb6217e5f1301acad76182c2f062071
SIZE (BioPerl-Run-1.007003.tar.gz) = 5138162
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
- p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
- p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
- p5-BioPerl>=1.007000 : biology/p5-BioPerl
- p5-Config-Any>=0 : devel/p5-Config-Any
- p5-File-Sort>=0 : misc/p5-File-Sort
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- perl5>=5.32.r0<5.33 : lang/perl5.32
- p5-Module-Build>=0.4206 : devel/p5-Module-Build
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-Algorithm-Diff>=0 : devel/p5-Algorithm-Diff
- p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
- p5-Bio-FeatureIO>=0 : biology/p5-Bio-FeatureIO
- p5-BioPerl>=1.007000 : biology/p5-BioPerl
- p5-Config-Any>=0 : devel/p5-Config-Any
- p5-File-Sort>=0 : misc/p5-File-Sort
- p5-IO-String>=0 : devel/p5-IO-String
- p5-IPC-Run>=0 : devel/p5-IPC-Run
- p5-XML-Twig>=0 : textproc/p5-XML-Twig
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for p5-BioPerl-Run-1.007003:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_p5-BioPerl-Run
- USES:
- perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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