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Port details on branch 2022Q2
p5-Bio-MAGETAB Data model and utility API for the MAGE-TAB format
1.31_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.31_2Version of this port present on the latest quarterly branch.
Maintainer: perl@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-07-01 09:03:56
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: GPLv2
WWW:
https://metacpan.org/release/Bio-MAGETAB
Description:
p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This is a beta release. All functions have now been implemented and most have test suites; the exceptions include the modules involved in export of MAGE-TAB documents, which are still a little experimental in nature. The API is mostly finalised (and fully documented), but some details may yet change where necessary to improve usability.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (124 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-Bio-MAGETAB-1.31_2/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-MAGETAB-1.31_2/LICENSE
  3. /usr/local/share/licenses/p5-Bio-MAGETAB-1.31_2/GPLv2
  4. bin/deploy_magetab_db.pl
  5. bin/fix_ae_magetab.pl
  6. bin/read_magetab.pl
  7. bin/unload_magetab_namespace.pl
  8. lib/perl5/site_perl/Bio/MAGETAB.pm
  9. lib/perl5/site_perl/Bio/MAGETAB/ArrayDesign.pm
  10. lib/perl5/site_perl/Bio/MAGETAB/Assay.pm
  11. lib/perl5/site_perl/Bio/MAGETAB/BaseClass.pm
  12. lib/perl5/site_perl/Bio/MAGETAB/Comment.pm
  13. lib/perl5/site_perl/Bio/MAGETAB/CompositeElement.pm
  14. lib/perl5/site_perl/Bio/MAGETAB/Contact.pm
  15. lib/perl5/site_perl/Bio/MAGETAB/ControlledTerm.pm
  16. lib/perl5/site_perl/Bio/MAGETAB/Data.pm
  17. lib/perl5/site_perl/Bio/MAGETAB/DataAcquisition.pm
  18. lib/perl5/site_perl/Bio/MAGETAB/DataFile.pm
  19. lib/perl5/site_perl/Bio/MAGETAB/DataMatrix.pm
  20. lib/perl5/site_perl/Bio/MAGETAB/DatabaseEntry.pm
  21. lib/perl5/site_perl/Bio/MAGETAB/DesignElement.pm
  22. lib/perl5/site_perl/Bio/MAGETAB/Edge.pm
  23. lib/perl5/site_perl/Bio/MAGETAB/Event.pm
  24. lib/perl5/site_perl/Bio/MAGETAB/Extract.pm
  25. lib/perl5/site_perl/Bio/MAGETAB/Factor.pm
  26. lib/perl5/site_perl/Bio/MAGETAB/FactorValue.pm
  27. lib/perl5/site_perl/Bio/MAGETAB/Feature.pm
  28. lib/perl5/site_perl/Bio/MAGETAB/Investigation.pm
  29. lib/perl5/site_perl/Bio/MAGETAB/LabeledExtract.pm
  30. lib/perl5/site_perl/Bio/MAGETAB/Material.pm
  31. lib/perl5/site_perl/Bio/MAGETAB/MatrixColumn.pm
  32. lib/perl5/site_perl/Bio/MAGETAB/MatrixRow.pm
  33. lib/perl5/site_perl/Bio/MAGETAB/Measurement.pm
  34. lib/perl5/site_perl/Bio/MAGETAB/Node.pm
  35. lib/perl5/site_perl/Bio/MAGETAB/Normalization.pm
  36. lib/perl5/site_perl/Bio/MAGETAB/ParameterValue.pm
  37. lib/perl5/site_perl/Bio/MAGETAB/Protocol.pm
  38. lib/perl5/site_perl/Bio/MAGETAB/ProtocolApplication.pm
  39. lib/perl5/site_perl/Bio/MAGETAB/ProtocolParameter.pm
  40. lib/perl5/site_perl/Bio/MAGETAB/Publication.pm
  41. lib/perl5/site_perl/Bio/MAGETAB/Reporter.pm
  42. lib/perl5/site_perl/Bio/MAGETAB/SDRF.pm
  43. lib/perl5/site_perl/Bio/MAGETAB/SDRFRow.pm
  44. lib/perl5/site_perl/Bio/MAGETAB/Sample.pm
  45. lib/perl5/site_perl/Bio/MAGETAB/Source.pm
  46. lib/perl5/site_perl/Bio/MAGETAB/TermSource.pm
  47. lib/perl5/site_perl/Bio/MAGETAB/Types.pm
  48. lib/perl5/site_perl/Bio/MAGETAB/Util/Builder.pm
  49. lib/perl5/site_perl/Bio/MAGETAB/Util/DBLoader.pm
  50. lib/perl5/site_perl/Bio/MAGETAB/Util/Persistence.pm
  51. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader.pm
  52. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/ADF.pm
  53. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/DataMatrix.pm
  54. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/IDF.pm
  55. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/SDRF.pm
  56. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/Tabfile.pm
  57. lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/TagValueFile.pm
  58. lib/perl5/site_perl/Bio/MAGETAB/Util/RewriteAE.pm
  59. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer.pm
  60. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/ADF.pm
  61. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/GraphViz.pm
  62. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/IDF.pm
  63. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/SDRF.pm
  64. lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/Tabfile.pm
  65. lib/perl5/site_perl/man/man3/Bio::MAGETAB.3.gz
  66. lib/perl5/site_perl/man/man3/Bio::MAGETAB::ArrayDesign.3.gz
  67. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Assay.3.gz
  68. lib/perl5/site_perl/man/man3/Bio::MAGETAB::BaseClass.3.gz
  69. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Comment.3.gz
  70. lib/perl5/site_perl/man/man3/Bio::MAGETAB::CompositeElement.3.gz
  71. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Contact.3.gz
  72. lib/perl5/site_perl/man/man3/Bio::MAGETAB::ControlledTerm.3.gz
  73. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Data.3.gz
  74. lib/perl5/site_perl/man/man3/Bio::MAGETAB::DataAcquisition.3.gz
  75. lib/perl5/site_perl/man/man3/Bio::MAGETAB::DataFile.3.gz
  76. lib/perl5/site_perl/man/man3/Bio::MAGETAB::DataMatrix.3.gz
  77. lib/perl5/site_perl/man/man3/Bio::MAGETAB::DatabaseEntry.3.gz
  78. lib/perl5/site_perl/man/man3/Bio::MAGETAB::DesignElement.3.gz
  79. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Edge.3.gz
  80. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Event.3.gz
  81. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Extract.3.gz
  82. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Factor.3.gz
  83. lib/perl5/site_perl/man/man3/Bio::MAGETAB::FactorValue.3.gz
  84. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Feature.3.gz
  85. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Investigation.3.gz
  86. lib/perl5/site_perl/man/man3/Bio::MAGETAB::LabeledExtract.3.gz
  87. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Material.3.gz
  88. lib/perl5/site_perl/man/man3/Bio::MAGETAB::MatrixColumn.3.gz
  89. lib/perl5/site_perl/man/man3/Bio::MAGETAB::MatrixRow.3.gz
  90. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Measurement.3.gz
  91. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Node.3.gz
  92. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Normalization.3.gz
  93. lib/perl5/site_perl/man/man3/Bio::MAGETAB::ParameterValue.3.gz
  94. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Protocol.3.gz
  95. lib/perl5/site_perl/man/man3/Bio::MAGETAB::ProtocolApplication.3.gz
  96. lib/perl5/site_perl/man/man3/Bio::MAGETAB::ProtocolParameter.3.gz
  97. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Publication.3.gz
  98. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Reporter.3.gz
  99. lib/perl5/site_perl/man/man3/Bio::MAGETAB::SDRF.3.gz
  100. lib/perl5/site_perl/man/man3/Bio::MAGETAB::SDRFRow.3.gz
  101. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Sample.3.gz
  102. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Source.3.gz
  103. lib/perl5/site_perl/man/man3/Bio::MAGETAB::TermSource.3.gz
  104. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Types.3.gz
  105. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Builder.3.gz
  106. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::DBLoader.3.gz
  107. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Persistence.3.gz
  108. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader.3.gz
  109. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::ADF.3.gz
  110. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::DataMatrix.3.gz
  111. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::IDF.3.gz
  112. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::SDRF.3.gz
  113. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::Tabfile.3.gz
  114. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::TagValueFile.3.gz
  115. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::RewriteAE.3.gz
  116. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer.3.gz
  117. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::ADF.3.gz
  118. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::GraphViz.3.gz
  119. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::IDF.3.gz
  120. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::SDRF.3.gz
  121. lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::Tabfile.3.gz
  122. @owner
  123. @group
  124. @mode
Collapse this list.
Dependency lines:
  • p5-Bio-MAGETAB>0:biology/p5-Bio-MAGETAB
To install the port:
cd /usr/ports/biology/p5-Bio-MAGETAB/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-MAGETAB
  • pkg install p5-Bio-MAGETAB
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Bio-MAGETAB
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (Bio-MAGETAB-1.31.tar.gz) = d94954a4d4d942774be85d80cff244b94e43c19c060019e4d7d5eebb1004d774 SIZE (Bio-MAGETAB-1.31.tar.gz) = 255578
Packages (timestamps in pop-ups are UTC):
p5-Bio-MAGETAB
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.31_21.31_21.31_21.31_21.31_2-1.31_2-
FreeBSD:13:quarterly1.31_21.31_21.31_21.31_21.31_21.31_21.31_21.31_2
FreeBSD:14:latest1.31_21.31_21.31_21.31_21.31_21.31_2-1.31_2
FreeBSD:14:quarterly1.31_21.31_2-1.31_21.31_21.31_21.31_21.31_2
FreeBSD:15:latest1.31_21.31_2n/a1.31_2n/a1.31_21.31_21.31_2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Date-Manip>=5.44 : devel/p5-Date-Manip
  2. p5-DateTime>=0.43.02 : devel/p5-DateTime
  3. p5-DateTime-Format-DateManip>=0.04 : devel/p5-DateTime-Format-DateManip
  4. p5-Email-Valid>=0.179 : mail/p5-Email-Valid
  5. p5-Moose>=0.43 : devel/p5-Moose
  6. p5-MooseX-FollowPBP>=0.04 : devel/p5-MooseX-FollowPBP
  7. p5-MooseX-Types>=0.10 : devel/p5-MooseX-Types
  8. p5-Params-Coerce>=0.14 : devel/p5-Params-Coerce
  9. p5-Parse-RecDescent>=1.965001 : devel/p5-Parse-RecDescent
  10. p5-Text-CSV_XS>=0.32 : textproc/p5-Text-CSV_XS
  11. p5-URI>=1.35 : net/p5-URI
  12. perl5>=5.32.r0<5.33 : lang/perl5.32
  13. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Date-Manip>=5.44 : devel/p5-Date-Manip
  2. p5-DateTime>=0.43.02 : devel/p5-DateTime
  3. p5-DateTime-Format-DateManip>=0.04 : devel/p5-DateTime-Format-DateManip
  4. p5-Email-Valid>=0.179 : mail/p5-Email-Valid
  5. p5-Moose>=0.43 : devel/p5-Moose
  6. p5-MooseX-FollowPBP>=0.04 : devel/p5-MooseX-FollowPBP
  7. p5-MooseX-Types>=0.10 : devel/p5-MooseX-Types
  8. p5-Params-Coerce>=0.14 : devel/p5-Params-Coerce
  9. p5-Parse-RecDescent>=1.965001 : devel/p5-Parse-RecDescent
  10. p5-Text-CSV_XS>=0.32 : textproc/p5-Text-CSV_XS
  11. p5-URI>=1.35 : net/p5-URI
  12. perl5>=5.32.r0<5.33 : lang/perl5.32
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_p5-Bio-MAGETAB
USES:
perl5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
Collapse this list.

There are no commits on branch 2022Q2 for this port
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