non port: biology/p5-Bio-Das/Makefile |
Number of commits found: 40 |
Wednesday, 7 Sep 2022
|
21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
|
14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Tuesday, 6 Apr 2021
|
14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Saturday, 6 Oct 2018
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13:06 des
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.
Approved by: portmgr (adamw)
 |
Friday, 15 Sep 2017
|
08:58 mat
Fix license information for portgs that use "the same license as Perl".
Sponsored by: Absolight
 |
Sunday, 18 Dec 2016
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15:25 sunpoet
- Add LICENSE
- Add NO_ARCH
- Sort *_DEPENDS
- Bump PORTREVISION for biology/p5-bioperl renaming
 |
Friday, 1 Apr 2016
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13:29 mat
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Wednesday, 26 Nov 2014
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13:08 mat
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.
As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.
The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.
The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.
PR: 194969
Differential Revision: https://reviews.freebsd.org/D1019
Exp-run by: antoine
Reviewed by: perl@
Approved by: portmgr
 |
Sunday, 5 Jan 2014
|
12:07 az
- support stage
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Friday, 2 Aug 2013
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18:52 mat
- Convert to new perl framework
- Trim Makefile header
- Remove MAKE_JOBS_SAFE=yes, it's the default.
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Monday, 17 Dec 2012
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15:39 az
Cleanup supporting perl version 5.8 and 5.10,
lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
 |
Sunday, 10 Jun 2012
|
18:42 swills
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
about for a while.
PR: ports/168208
Approved by: portmgr (miwi)
 |
Friday, 1 Jun 2012
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05:26 dinoex
- update png to 1.5.10
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Tuesday, 13 Mar 2012
|
16:15 pgollucci
- Revert ports/165605 as requested by portmgr@
Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.
PR: ports/165605
Approved by: portmgr (bapt)
Feature safe: yes (I sure hope so)
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Thursday, 8 Mar 2012
|
18:45 pgollucci
- Remove ports that only work with < perl 5.12 (devel/p5-B-Size,
devel/p5-Devel-Arena)
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}
PR: ports/165605
Submitted by: pgollucci (myself)
Approved by: portmgr (linimon)
Exp Run by: linimon
Tested by: make index
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Tuesday, 21 Sep 2010
|
07:56 mm
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION
 |
Wednesday, 30 Jun 2010
|
07:36 wen
- Update to 1.17
Feature safe: yes
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Thursday, 24 Jun 2010
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00:24 wen
- Update to 1.16
Feature safe: yes
 |
Saturday, 12 Jun 2010
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06:18 wen
- Update to 1.15
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Sunday, 28 Mar 2010
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06:47 dinoex
- update to 1.4.1
Reviewed by: exp8 run on pointyhat
Supported by: miwi
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Friday, 5 Feb 2010
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11:46 dinoex
- update to jpeg-8
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Tuesday, 8 Sep 2009
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12:08 jadawin
- Update to 1.14
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Thursday, 27 Aug 2009
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20:34 miwi
- Update to 1.12
PR: 138230
Submitted by: Wen Heping <wenheping@gmail.com>
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Friday, 31 Jul 2009
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13:57 dinoex
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by: edwin
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Wednesday, 22 Jul 2009
|
16:27 pgollucci
- lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks
PR: ports/135398
Tested by: 2 -exp runs by pav
Approved by: portmgr (pav)
 |
Monday, 8 Jun 2009
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09:30 jadawin
- Update to 1.11
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Thursday, 11 Dec 2008
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05:19 leeym
- update to 1.10
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Saturday, 31 May 2008
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13:46 miwi
- Update to 1.09
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Friday, 23 May 2008
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12:22 mat
Update to 1.08
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Monday, 19 May 2008
|
13:12 araujo
- Include some ports in perl5 category.
PR: ports/123530
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: flz (portmgr)
 |
Thursday, 17 Apr 2008
|
14:30 araujo
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.
PR: ports/122674
Submitted by: Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by: araujo (myself)
Approved by: portmgr (pav)
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Wednesday, 12 Mar 2008
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12:24 miwi
- Update to 1.07
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Friday, 7 Sep 2007
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14:45 miwi
- Update to 1.06
- Remove 4.X cruft
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Saturday, 19 May 2007
|
20:32 flz
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
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Wednesday, 14 Mar 2007
|
08:18 linimon
Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to
email.
Hat: portmgr
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Tuesday, 19 Dec 2006
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06:47 rafan
- Update to 1.03
PR: ports/106300
Submitted by: chinsan
Approved by: maintainer timeout (15 days)
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Sunday, 3 Dec 2006
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12:45 demon
Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.
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Saturday, 26 Nov 2005
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03:40 fenner
Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
20 sites instead of just 1.
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Thursday, 1 Sep 2005
|
13:09 garga
Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.
PR: ports/76379
Submitted by: Razi Khaja <razi@genet.sickkids.on.ca>
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Number of commits found: 40 |