21:33 Yuri Victorovich (yuri) 

biology/ngs-sdk: Not for powerpc, powerpc64le

    076c40f

22:51 Yuri Victorovich (yuri) 

biology/ngs-sdk: Update 2.11.2 → 3.0.1

Reported by:	portscout

    3b489c6

21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

22:34 Yuri Victorovich (yuri) 

biology/ngs-sdk: Broken on armv6, armv7

Reported by:	fallout

    768fb66

01:33 Yuri Victorovich (yuri) 

biology/ngs-sdk: Revert: Un-remove, ngs was moved into sra-tools

This reverts commit 1cb8897f610a381ddf2802eb09acfba97b15b505.

sra-tools needs to be updated first.

Reported by:	Tomoaki AOKI <junchoon@dec.sakura.ne.jp>, perciva@

    d3e9586

19:03 Yuri Victorovich (yuri) 

biology/ngs-sdk: Remove, ngs was moved into sra-tools

    1cb8897

09:29 Yuri Victorovich (yuri) 

biology/ngs-sdk: Update 2.11.1 -> 2.11.2

Reported by:	portscout

    3bd735f

17:17 Yuri Victorovich (yuri) 

biology/ngs-sdk: Update 2.11.0-> 2.11.1

Reported by:	portscout

    e231650

17:01 Yuri Victorovich (yuri) 

biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by
explicit 'amd64' instead of $ARCH

Reported by:	fallout

    b2993cf

17:47 Yuri Victorovich (yuri) 

biology/ngs-sdk: Restore static libs installed with symlinks as shared libs are
usually installed

Symlinks like this libxx.a->libxx.a.N.N.N first looked broken but it turned out
that this is intentional.

    fc2fe6e

08:51 Yuri Victorovich (yuri) 

biology/ngs-sdk: Improve the 'install' target and other parts of Makefile,
report issues to upstream.

    dd04803

08:09 Mathieu Arnold (mat) 

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

    cf118cc

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

06:39 yuri 

biology/ngs-sdk: Update 2.10.9 -> 2.11.0

Reported by:	portscout

 

01:46 linimon 

For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)

 

20:12 yuri 

biology/ngs-sdk: Update 2.10.5 -> 2.10.9

Reported by:	portscout

 

20:09 yuri 

biology/ngs-sdk: Update 2.10.4 -> 2.10.5

Reported by:	portscout

 

19:58 yuri 

biology/ngs-sdk: Update 2.10.2 -> 2.10.4

Reported by:	portscout

 

07:05 yuri 

biology/ngs-sdk: Update 2.10.1 -> 2.10.2

Reported by:	portscout

 

02:43 yuri 

biology/ngs-sdk: Update 2.10.0 -> 2.10.1

Reported by:	portscout

 

15:09 yuri 

biology/ngs-sdk: Update 2.9.6 -> 2.10.0

Reported by:	portscout

 

12:17 linimon 

Mark this port as not buildable on powerpc64:

  *** File 'Makefile.config.FreeBSD.powerpc' is missing. Please run ./configure

The configuration script may have other problems as well.  This needs
to be addressed by upstream (if there is interest).

Approved by:	portmgr (tier-2 blanket)

 

03:31 yuri 

biology/ngs-sdk: Update 2.9.4 -> 2.9.6

Reported by:	portscout

 

21:55 yuri 

biology/ngs-sdk: Update 2.9.3 -> 2.9.4

Reported by:	portscout

 

21:38 yuri 

biology/ngs-sdk: Update 2.9.2 -> 2.9.3

 

18:09 yuri 

biology/ngs-sdk: Update 2.9.1 -> 2.9.2

Reported by:	portscout

 

05:04 linimon 

Mark as broken on aarch64.

Approved by:	portmgr (tier-2 blanket)

 

09:33 yuri 

biology/ngs-sdk: Update 2.9.0 -> 2.9.1

Reported by:	portscout

 

23:58 yuri 

New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC
Sequence Read Archives