| non port: biology/ncbi-toolkit/Makefile |
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SVNWeb
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Number of commits found: 52 |
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Sat, 22 Oct 2022
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[ 09:36 Daniel Engberg (diizzy)  ]    df6c65a (Only the first 10 of 21 ports in this commit are shown above.  )
*/*: Bump PORTREVISION for consumers of libunistring
Reported by: jbeich
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Wed, 29 Jun 2022
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[ 14:53 Stefan Eßer (se) ] b521142
Fix CONFLICTS_INSTALL in benchmarks and biology
Approved by: portmgr (implicit)
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Sun, 6 Feb 2022
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[ 18:36 Stefan Eßer (se) ] bdd2d4a (Only the first 10 of 69 ports in this commit are shown above. )
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit)
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 30 Aug 2020
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[ 03:10 novel ]   (Only the first 10 of 16 ports in this commit are shown above. )
Chase security/p11-kit update
After switch to meson libp11-kit.so no longer has symbols
in the LIBP11_KIT_1.0 namespace. As a workaround, bump
PORTREVISION of consumers to get those rebuilt.
See more details in the comments of the linked PR.
PR: 248819
Reported by: John Hein
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Sat, 16 May 2020
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[ 10:51 sunpoet ] (Only the first 10 of 34 ports in this commit are shown above. )
Bump PORTREVISION for security/nettle shlib change
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Sat, 28 Sep 2019
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[ 10:52 zeising ]
biologi/ncbi-toolkit: Remove dependency on libXp
Remove the dependency on libXp from ncbi-toolkit, since libXp is deprecated
and it isn't needed.
Remove deprecation from ncbi-toolkit.
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Fri, 27 Sep 2019
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[ 16:18 zeising ] (Only the first 10 of 13 ports in this commit are shown above. )
Deprecate x11/libXp, it is deprecated upstream
Deprecate x11/libXp, since it is about to be deprecated upstream. Do *not*
yet set a removal date for x11/libXp, this will be decided later, once most
dependencies are fixed.
Deprecate all ports depending on x11/libXp.
* astro/xephem
* audio/xmcd
* audio/xmmix
* biology/ncbi-toolkit
* deskutils/xmdiary
* ftp/llnlxdir
* ftp/llnlxftp
* graphics/SciPlot
* misc/xtar
* multimedia/mpeg2play
* science/afni
* textproc/mgdiff
Sprinkle USES=xorg as needed.
Discussed with: bapt
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Tue, 9 Jul 2019
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[ 17:13 sunpoet ] (Only the first 10 of 38 ports in this commit are shown above. )
Update security/nettle to 3.5.1
- Bump PORTREVISION of dependent ports for shlib change
- Fix build of devel/pijul [1]
Changes: https://git.lysator.liu.se/nettle/nettle/blob/master/NEWS
PR: 238991
Exp-run by: antoine
Thanks to: tobik [1]
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Sat, 9 Feb 2019
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[ 23:25 sunpoet ] (Only the first 10 of 24 ports in this commit are shown above. )
Update dns/libidn2 to 2.1.1
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://gitlab.com/libidn/libidn2/blob/master/NEWS
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Sun, 6 Jan 2019
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[ 20:39 sunpoet ] (Only the first 10 of 24 ports in this commit are shown above. )
Update dns/libidn2 to 2.1.0
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://gitlab.com/libidn/libidn2/blob/master/NEWS
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Sun, 7 Oct 2018
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[ 18:29 yuri ]
biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06
Port changes:
* Take maintainership
* Add to LIB_DEPENDS and USExx
* Remove lists of executables and manpages, use file listing instead (*)
* Update WWW
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Thu, 8 Dec 2016
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[ 16:39 tijl ] (Only the first 10 of 39 ports in this commit are shown above. )
Remove libjpeg.so.11 compatibility link that was added in r374303 to
prevent massive PORTREVISION bumps. Bump dependent ports that have not
been bumped since.
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Wed, 2 Nov 2016
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[ 22:45 mat ] (Only the first 10 of 110 ports in this commit are shown above. )
Cleanup no longer needed CHMOD usage after r424898.
PR: 213743
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolight
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Fri, 24 Jun 2016
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[ 09:04 amdmi3 ]
- Add missing dependency, fixing build
- Switch to options helpers
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Sun, 23 Mar 2014
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[ 20:50 pawel ]
Add staging support
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Fri, 20 Sep 2013
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[ 15:55 bapt ] (Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Wed, 4 Sep 2013
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[ 18:06 madpilot ] (Only the first 10 of 129 ports in this commit are shown above. )
- Make ports use the libc provided iconv implementation on 10-CURRENT
after r254273
- Fix a bunch of ports to properly work after this
- Mark converters/libiconv as IGNORE for systems with iconv in libc
Reviewed by: bapt
Approved by: portmgr (bapt)
Discussed with: bapt, bsam (who both contributed ideas and code)
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Tue, 9 Jul 2013
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[ 21:49 bapt ]
Convert from USE_MOTIF to USES=motif
While here:
- trim headers
- Remove indefinite article from comment
- convert USE_GMAKE to USES=gmake
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Thu, 14 Mar 2013
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[ 05:27 miwi ]
- Update to 2012.06.20
PR: 176544
Submitted by: Ports Fury
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Mon, 1 Oct 2012
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[ 14:45 tabthorpe ] (Only the first 10 of 47 ports in this commit are shown above. )
- Reassign to the heap at maintainer's request
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Mon, 2 May 2011
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[ 12:41 makc ] (Only the first 10 of 16 ports in this commit are shown above. )
Fix build with open-motif-2.3.3
PR: ports/154044
Submitted by: Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by: pav
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Sun, 31 Jan 2010
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[ 03:42 pgollucci ]
- use $SUB_FILES to dynamically adjust pkg-message
PR: ports/142408
Submitted by: Sevan Janiyan <venture37@geeklan.co.uk>
Approved by: fernan@iib.unsam.edu.ar (maintainer)
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Sat, 28 Mar 2009
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[ 16:59 miwi ]
- Update to 2009.03.01
PR: 133099
Submitted by: Fernan Aguero <fernan.aguero@gmail.com>
Approved by: maintainer
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Sat, 19 Apr 2008
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[ 17:56 miwi ] (Only the first 10 of 2842 ports in this commit are shown above. )
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+
Thanks to all Helpers:
Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
ehaupt, nox, itetcu, flz, pav
PR: 116263
Tested on: pointyhat
Approved by: portmgr (pav)
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Sat, 19 May 2007
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[ 20:32 flz ] (Only the first 10 of 7868 ports in this commit are shown above. )
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
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Sat, 9 Dec 2006
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[ 07:48 rafan ]
- Respect X11BASE
Approved by: portmgr (linimon)
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Tue, 6 Jun 2006
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[ 12:05 itetcu ]
Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
blastall now uses the new engine by default, resulting
in significant performance improvements and enabling
query concatenation for all program types.
PR: ports/98570
Submitted by: maintainer
Approved by: lawrance (mentor, implict)
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Sat, 14 Jan 2006
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[ 19:34 pav ]
- Update to 2005.12.06
PR: ports/91714
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
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Tue, 11 Oct 2005
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[ 22:33 sem ]
- Update to 20050605
PR: ports/87266
Submitted by: maintainer
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Wed, 14 Sep 2005
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[ 09:24 vs ]
Don't strip static libraries on installation ;)
(Unbreaks e.g. biology/nclever)
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Sun, 20 Mar 2005
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[ 11:47 pav ]
- Fix man page damage I did last night
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
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Sat, 19 Mar 2005
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[ 21:32 pav ]
- Update to 2.2.10 from 20041020
- Transfer maintainership
PR: ports/67735
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by: old maintainer indirectly in
http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html
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Mon, 1 Nov 2004
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[ 22:21 pav ]
- Update to 2004.06.16
Inspired by: ports/72726
Approved by: maintainer timeout (2 weeks)
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Thu, 13 Nov 2003
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[ 14:45 trevor ] (Only the first 10 of 81 ports in this commit are shown above. )
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
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Mon, 5 May 2003
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[ 12:24 arved ]
Update to 2003.04.21
PR: 51709
Submitted by: Tony Maher <tonymaher@optushome.com.au>
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Fri, 21 Feb 2003
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[ 11:01 knu ] (Only the first 10 of 72 ports in this commit are shown above. )
De-pkg-comment.
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Sat, 21 Sep 2002
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[ 14:56 ijliao ]
add forgotten "USE_REINPLACE=yes"
Submitted by: maintainer
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[ 06:59 ijliao ]
upgrade to 20020426
PR: 39357
Submitted by: maintainer
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Sat, 8 Jun 2002
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[ 00:40 petef ]
Correct MASTER_SITES.
PR: 39016
Submitted by: maintainer
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Fri, 22 Feb 2002
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[ 07:57 pat ]
Update to 2001.12.20
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Wed, 19 Sep 2001
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[ 14:03 wjv ]
- Add installation of include files - Bump PORTREVISION
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Mon, 6 Aug 2001
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[ 11:50 wjv ]
Update maintainer's email address.
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Tue, 10 Jul 2001
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[ 17:35 fenner ]
Update Tony Maher's email address.
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Wed, 20 Jun 2001
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[ 15:25 wjv ]
Update to version 2001.04.03; add installation of some documentation.
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Wed, 15 Nov 2000
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[ 00:54 jeh ]
They made changes to the "blast" program.
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Tue, 7 Nov 2000
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[ 23:28 asami ] (Only the first 10 of 56 ports in this commit are shown above. )
Change motif to a normal dependency. REQUIRES_MOTIF is now called USE_MOTIF
and generates a LIB_DEPENDS to x11-toolkits/open-motif. As before, it implies
USE_XPM (and therefore USE_XLIB). Motif-dummy is removed from
PKG_IGNORE_DEPENDS, whose sole resident is now XFree86-3.
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Fri, 3 Nov 2000
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[ 13:23 jeh ]
Yes. They did re-roll this version, it is legit. They donot version the dist,
but store them in versioned dir. Update Makefile to handle that. Update
CHECKSUM
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Thu, 2 Nov 2000
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[ 11:25 jeh ]
Updated to new version. That is the pits, the day after it becomes a port
they release a new version. This is a new version, w/o a number.
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Sun, 29 Oct 2000
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[ 13:56 jeh ]
New Port: biology/ncbi-toolkit National Center for Biotechnology Information
(NCBI) Development Toolkit.
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Number of commits found: 52 |
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