Port details on branch 2022Q2 |
- mummer Modular system for rapid whole genome alignment
- 4.0.0.b2.2_3 biology =0 4.0.0.b2.2_3Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2007-12-14 20:56:11
- Last Update: 2023-11-06 10:03:47
- Commit Hash: 06df180
- License: ART10
- WWW:
- https://mummer.sourceforge.net/
- Description:
- MUMmer is a modular system for the rapid whole genome alignment of finished
or draft sequence. This package provides an efficient suffix tree library,
seed-and-extend alignment, SNP detection, repeat detection, and
visualization tools.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- Conflicts:
- CONFLICTS_INSTALL:
- Conflicts Matches:
-
There are no Conflicts Matches for this port. This is usually an error.
- To install the port:
- cd /usr/ports/biology/mummer/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/mummer
- pkg install mummer
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: mummer
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1544513160
SHA256 (mummer4-mummer-v4.0.0beta2-2-g277dac5_GH0.tar.gz) = 4b77fb57f0e7994ed0cb9886de23ce620b89cb16734df82ba492dbc750e387f1
SIZE (mummer4-mummer-v4.0.0beta2-2-g277dac5_GH0.tar.gz) = 18369428
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- yaggo : devel/yaggo
- gmake>=4.3 : devel/gmake
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- libtoolize : devel/libtool
- perl5>=5.36<5.37 : lang/perl5.36
- Runtime dependencies:
-
- perl5>=5.36<5.37 : lang/perl5.36
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_mummer
- USES:
- autoreconf compiler:c++11-lang gmake libtool perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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