21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

16:40 Yuri Victorovich (yuri) 

biology/mmseqs2: Not require OpenMP on systems where OpenMP isn't enabled

Reported by:	fallout
Approved by:	portmgr (blanket)

    280dd32

21:05 Piotr Kubaj (pkubaj) 

biology/mmseqs2: disable on 32-bits

32-bits are not supported per https://github.com/soedinglab/MMseqs2/issues/460

    031ddba

14:04 Jason W. Bacon (jwb) 

biology/mmseqs2: Fix runtime error when built with clang

Disable IPS4O to avoid deadlocks (upstream developer fix)
Removing USE_GCC should fix pkg build errors caused by

    a881e9d

16:29 Jason W. Bacon (jwb) 

biology/mmseqs2: Enable at least SSE2 by default

Hangs when built with clang and minimal optimizations, so build with
GCC temporarily.  Upstream is investigating.

    b8bf1cf

17:31 Jason W. Bacon (jwb) 

biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite

MMseqs2 (Many-against-Many sequence searching) is a software suite to search
and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source
GPL-licensed software implemented in C++ for FreeBSD, Linux, MacOS, and (via
via cygwin) Windows. The software is designed to run on multiple cores and
servers and exhibits very good scalability. MMseqs2 can run 10000 times
faster than BLAST. At 100 times its speed it achieves almost the same
sensitivity. It can perform profile searches with the same sensitivity as
PSI-BLAST at over 400 times its speed.

    cf14bbb