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A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

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Port details
migrate Program to estimate population sizes and migration rates
5.0.5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.6.11Version of this port present on the latest quarterly branch.
Maintainer: eduardo@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-08-06 10:07:46
Last Update: 2024-03-27 12:36:40
Commit Hash: dc29da5
License: MIT
WWW:
https://popgen.sc.fsu.edu/Migrate/Migrate-n.html
Description:
Migrate estimates effective population sizes and past migration rates between two or "n" populations assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. The n-population migrate can use sequence data, microsatellite data or electrophoretic data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (14 items)
Collapse this list.
  1. /usr/local/share/licenses/migrate-5.0.5/catalog.mk
  2. /usr/local/share/licenses/migrate-5.0.5/LICENSE
  3. /usr/local/share/licenses/migrate-5.0.5/MIT
  4. bin/migrate
  5. bin/migrate-n
  6. share/man/man1/migrate-n.1.gz
  7. share/man/man1/migrate.1.gz
  8. share/doc/migrate/graphics/librarian.gif
  9. share/doc/migrate/graphics/mail.gif
  10. share/doc/migrate/graphics/migrate.gif
  11. share/doc/migrate/graphics/packet.gif
  12. @owner
  13. @group
  14. @mode
Collapse this list.
Dependency lines:
  • migrate>0:biology/migrate
Conflicts:
CONFLICTS_INSTALL:
  • py*-sqlalchemy-migrate
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/migrate/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/migrate
  • pkg install migrate
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: migrate
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1711535851 SHA256 (migrate-5.0.5.src.tar.gz) = 43d456f2432c0ec77ad33877f184d3b4b36f61e416f8fffa51077768df91ea51 SIZE (migrate-5.0.5.src.tar.gz) = 4746835

Packages (timestamps in pop-ups are UTC):
migrate
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest3.6.11_13.6.11_1--3.6.11_1-3.6.11-
FreeBSD:13:quarterly3.6.113.6.11--3.6.113.6.113.6.113.6.11
FreeBSD:14:latest3.6.11_13.6.11_1--3.6.11_13.6.11-3.6.11
FreeBSD:14:quarterly3.6.113.6.11--3.6.113.6.113.6.113.6.11
FreeBSD:15:latest3.6.11_13.6.11_1n/a-n/a3.6.11_13.6.11_13.6.11_1
FreeBSD:15:quarterly--n/a-n/a---
This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for migrate-5.0.5: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples THREAD=off: Build with THREAD support ===> Use 'make config' to modify these settings
Options name:
biology_migrate
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://peterbeerli.com/migrate-html5/download_version4/
Collapse this list.

Number of commits found: 56

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.0.5
27 Mar 2024 12:36:40
commit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8ceecommit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8ceecommit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8ceecommit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8cee files touched by this commit
Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Fix extract

Extract fails on aarch64 with error:
(sample)
"dynsections.js: Cannot restore extended attributes:
com.apple.quarantine com.apple.quarantine: No such file or directory"
tar: Error exit delayed from previous errors.-

Fix extract with: --no-same-owner --no-same-permissions
5.0.5
27 Mar 2024 11:51:44
commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996 files touched by this commit
Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Update to 5.0.5

- Switch to DISTVERSION
- Add license
- Pet portlint, portclippy and portfmt
- Take maintainership

ChangeLog: https://peterbeerli.com/programs/migrate/distribution_4.x/HISTORY
3.6.11_1
09 Jan 2024 15:41:04
commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5dcommit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5dcommit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5dcommit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d files touched by this commit
Baptiste Daroussin (bapt) search for other commits by this committer
MAN[1-5]PREFIX: eleminate its usage  and move man to share/man
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
3.6.11
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.6.11
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
3.6.11
06 Feb 2022 18:36:07
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9ecommit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
3.6.11
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
3.6.11
19 Jan 2021 02:26:53
Revision:562005Original commit files touched by this commit
linimon search for other commits by this committer
Mark BROKEN on riscv64 the same as armv*:

  # make[2]: cannot open makefile..

Note the filname reported is "Makefile." (e.g. probably empty suffix).

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com build testing
3.6.11
18 Mar 2018 13:48:07
Revision:464909Original commit files touched by this commit
linimon search for other commits by this committer
Mark broken on armvX and mips.
3.6.11
17 Apr 2016 10:16:00
Revision:413499Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Switch to options helpers
- Regenerate patches with `make makepatch`
- Simplify plist
3.6.11
28 Jun 2015 15:30:41
Revision:390793Original commit files touched by this commit
wen search for other commits by this committer
- Update options
3.6.11
28 Jun 2015 13:31:39
Revision:390780Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.6.11
- Convert to optionsNG
3.6.9
18 May 2015 00:24:34
Revision:386649Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.6.9 and unbreak
3.6.7
05 Apr 2015 17:55:36
Revision:383309Original commit files touched by this commit
bapt search for other commits by this committer
Mark as broken unfetchable ports
3.6.7
24 Mar 2015 16:56:28
Revision:382123Original commit files touched by this commit
mi search for other commits by this committer
Upgrade from 3.6.6 to 3.6.7. Be sure to not extract the zlib
subdirectory.
3.6.6
24 Mar 2015 16:01:22
Revision:382111Original commit files touched by this commit
marino search for other commits by this committer
6 ports categories: Remove $PTHREAD_LIBS

Categories: cad, devel, java, x11-fm, biology, deskutils

approved by:	PTHREAD blanket
3.6.6
31 Jan 2015 06:35:25
Revision:378190Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.6.6

PR:		197039
Submitted by:	antont@inbox.lv
3.6.5
06 Dec 2014 14:54:48
Revision:374114Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.6.5
- Reset maintainer to ports@
3.5.1
29 Jan 2014 12:08:29
Revision:341721Original commit files touched by this commit
danfe search for other commits by this committer
- Stagify; cleanup Makefile and reorder the knobs a bit
- Drop the case for long unsupported alpha architecture
3.5.1
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
3.5.1
26 May 2013 07:49:48
Revision:319096Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.5.1
- Trim Makefile headers
- Convert to optionsNG
- Update WWW, MASTER_SITES and COMMENT
3.1.6
26 Apr 2013 04:03:55
Revision:316568Original commit files touched by this commit
gjb search for other commits by this committer
Update MASTERSITES for my server to use https

Approved by:	wen (maintainer, implicit)
3.1.6
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
3.1.6
14 Mar 2011 00:35:45
Original commit files touched by this commit
wen search for other commits by this committer
- Take maintainership
3.1.6
13 Mar 2011 06:08:54
Original commit files touched by this commit
tabthorpe search for other commits by this committer
- Reassign to the heap

PR:             ports/155507 ports/155508
3.1.6
01 Oct 2010 01:06:46
Original commit files touched by this commit
sunpoet search for other commits by this committer
- Add an additional MASTER_SITES

PR:             ports/151112
Submitted by:   gjb (maintainer)
Approved by:    pgollucci (mentor)
3.1.6
04 Sep 2010 15:32:58
Original commit files touched by this commit
decke search for other commits by this committer
- Update MAINTAINER to submitters new mail address

PR:             ports/150274
Submitted by:   Glen Barber <glen dot j dot barber at gmail dot com>
(maintainer)
Approved by:    beat (co-mentor, implicit)
3.1.6
30 May 2010 23:46:55
Original commit files touched by this commit
sylvio search for other commits by this committer
- Update to 3.1.6

PR:             ports/147194
Submitted by:   Glen Barber <glen.j.barber@gmail.com> (maintainer)
3.1.4
09 May 2010 13:59:34
Original commit files touched by this commit
sylvio search for other commits by this committer
- Update to 3.1.4

PR:             ports/146411
Submitted by:   Glen Barber <glen.j.barber@gmail.com> (maintainer)
3.1.3
24 Mar 2010 06:46:44
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 3.1.3
- Pass maintainership to submitter

PR:             ports/144992
Submitted by:   Glen Barber <glen.j.barber@gmail.com>
3.1.2
10 Feb 2010 09:47:48
Original commit files touched by this commit
edwin search for other commits by this committer
Update to 3.1.2
3.1.1
02 Feb 2010 22:42:47
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 3.1.1

PR:             143437
Submitted by:   Ports Fury
3.0.3
21 Dec 2009 02:19:12
Original commit files touched by this commit
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
3.0.3
14 Jan 2009 16:00:34
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 3.0.3

PR:             130459
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
2.4.3_1
27 Feb 2008 07:34:21
Original commit files touched by this commit
miwi search for other commits by this committer
- File was rerolled for a small bugfix.

Submitted by:   pointyhat via pav/erwin
2.4.3
25 Feb 2008 22:34:13
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.4.3

Submitted by:   Ports Fury
2.4.2
25 Jan 2008 20:49:45
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.4.2 (fix fetch problems)

Submitted by:   pointyhat via pav
2.4.1
20 Jan 2008 21:56:24
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.4.1

PR:             119719
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
2.3
03 Sep 2007 09:24:30
Original commit files touched by this commit
itetcu search for other commits by this committer
- Update to version 2.3

PR:             ports/116019
Submitted by:   KATO Tsuguru
2.1.3
10 Dec 2006 12:39:32
Original commit files touched by this commit
gabor search for other commits by this committer
- Update to 2.1.3
- Fix fetching
- Remove old patch and use MAKE_ARGS instead
- portlint(1) and whitespace

Approved by:    erwin (mentor)
2.0.3
03 May 2006 23:26:35
Original commit files touched by this commit
edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
2.0.3
24 Nov 2005 00:04:00
Original commit files touched by this commit
pav search for other commits by this committer
- Add SHA256
2.0.3
12 Apr 2005 03:26:57
Original commit files touched by this commit
obrien search for other commits by this committer
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
2.0.3
11 Apr 2005 08:04:41
Original commit files touched by this commit
obrien search for other commits by this committer
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
2.0.3
19 Feb 2005 06:38:25
Original commit files touched by this commit
krion search for other commits by this committer
Fix build on 4.x

PR:             ports/77697
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
2.0.3
18 Feb 2005 13:45:42
Original commit files touched by this commit
krion search for other commits by this committer
Update to version 2.0.3

PR:             ports/77676
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
1.7.6.1
22 Jan 2005 04:43:18
Original commit files touched by this commit
linimon search for other commits by this committer
With portmgr hat on, reset maintainership of this port.  All of wjv's
other ports were reset a couple of months ago; this one appears to have
been missed.
1.7.6.1
30 Jun 2004 06:55:56
Original commit files touched by this commit
linimon search for other commits by this committer
Update to 1.7.6.1.

PR:             ports/67429
Submitted by:   Roman Neuhauser <neuhauser at chello dot cz>
Approved by:    maintainer timeout (4 weeks)
1.2.4
31 Mar 2004 03:12:58
Original commit files touched by this commit
trevor search for other commits by this committer
SIZEify (maintainer timeout)
1.2.4
23 Feb 2004 03:59:05
Original commit files touched by this commit
kris search for other commits by this committer
BROKEN on alpha: Does not compile
1.2.4
22 Oct 2003 09:29:55
Original commit files touched by this commit
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
1.2.4
07 Mar 2003 05:56:43
Original commit files touched by this commit
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
22 Aug 2001 15:43:45
commit hash: fp1.17632@dev.null.freshports.orgcommit hash: fp1.17632@dev.null.freshports.orgcommit hash: fp1.17632@dev.null.freshports.orgcommit hash: fp1.17632@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
- Update to version 1.2.4    
06 Aug 2001 15:26:51
commit hash: fp1.16895@dev.null.freshports.orgcommit hash: fp1.16895@dev.null.freshports.orgcommit hash: fp1.16895@dev.null.freshports.orgcommit hash: fp1.16895@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Correct my email address.    
06 Aug 2001 14:07:46
commit hash: fp1.16890@dev.null.freshports.orgcommit hash: fp1.16890@dev.null.freshports.orgcommit hash: fp1.16890@dev.null.freshports.orgcommit hash: fp1.16890@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Add migrate 1.2,   a program to estimate population sizes and   migration rates.
   

Number of commits found: 56