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Port details on branch 2022Q2
libsbml API Library for Working with SBML File
5.19.0_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 5.19.0_2Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-04-24 04:16:20
Last Update: 2022-04-10 19:47:23
Commit Hash: 035e778
Also Listed In: devel
License: LGPL21
WWW:
https://synonym.caltech.edu/
Description:
LibSBML is an open-source programming library to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with example programs), but rather a library you can embed in your own applications. LibSBML understands all Levels and Versions of SBML, as well as the SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in ISO C and C++ but can be used from all the languages listed in the right-hand box. WWW: https://sbml.org/software/libsbml/ WWW: https://github.com/sbmlteam/libsbml WWW: https://synonym.caltech.edu/
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (541 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/libsbml-5.19.0_2/catalog.mk
  3. /usr/local/share/licenses/libsbml-5.19.0_2/LICENSE
  4. /usr/local/share/licenses/libsbml-5.19.0_2/LGPL21
  5. include/sbml/AlgebraicRule.h
  6. include/sbml/AssignmentRule.h
  7. include/sbml/Compartment.h
  8. include/sbml/CompartmentType.h
  9. include/sbml/Constraint.h
  10. include/sbml/Delay.h
  11. include/sbml/Event.h
  12. include/sbml/EventAssignment.h
  13. include/sbml/ExpectedAttributes.h
  14. include/sbml/FunctionDefinition.h
  15. include/sbml/InitialAssignment.h
  16. include/sbml/KineticLaw.h
  17. include/sbml/ListOf.h
  18. include/sbml/LocalParameter.h
  19. include/sbml/Model.h
  20. include/sbml/ModifierSpeciesReference.h
  21. include/sbml/Parameter.h
  22. include/sbml/Priority.h
  23. include/sbml/RateRule.h
  24. include/sbml/Reaction.h
  25. include/sbml/Rule.h
  26. include/sbml/SBMLConstructorException.h
  27. include/sbml/SBMLDocument.h
  28. include/sbml/SBMLError.h
  29. include/sbml/SBMLErrorLog.h
  30. include/sbml/SBMLErrorTable.h
  31. include/sbml/SBMLNamespaces.h
  32. include/sbml/SBMLReader.h
  33. include/sbml/SBMLTransforms.h
  34. include/sbml/SBMLTypeCodes.h
  35. include/sbml/SBMLTypes.h
  36. include/sbml/SBMLVisitor.h
  37. include/sbml/SBMLWriter.h
  38. include/sbml/SBO.h
  39. include/sbml/SBase.h
  40. include/sbml/SimpleSpeciesReference.h
  41. include/sbml/Species.h
  42. include/sbml/SpeciesReference.h
  43. include/sbml/SpeciesType.h
  44. include/sbml/StoichiometryMath.h
  45. include/sbml/SyntaxChecker.h
  46. include/sbml/Trigger.h
  47. include/sbml/Unit.h
  48. include/sbml/UnitDefinition.h
  49. include/sbml/UnitKind.h
  50. include/sbml/annotation/CVTerm.h
  51. include/sbml/annotation/Date.h
  52. include/sbml/annotation/ModelCreator.h
  53. include/sbml/annotation/ModelHistory.h
  54. include/sbml/annotation/RDFAnnotation.h
  55. include/sbml/annotation/RDFAnnotationParser.h
  56. include/sbml/common/common-documentation.h
  57. include/sbml/common/common-sbmlerror-codes.h
  58. include/sbml/common/common.h
  59. include/sbml/common/extern.h
  60. include/sbml/common/libsbml-config-common.h
  61. include/sbml/common/libsbml-config-packages.h
  62. include/sbml/common/libsbml-config.h
  63. include/sbml/common/libsbml-namespace.h
  64. include/sbml/common/libsbml-package.h
  65. include/sbml/common/libsbml-version.h
  66. include/sbml/common/operationReturnValues.h
  67. include/sbml/common/sbmlfwd.h
  68. include/sbml/compress/CompressCommon.h
  69. include/sbml/compress/InputDecompressor.h
  70. include/sbml/compress/OutputCompressor.h
  71. include/sbml/compress/bzfstream.h
  72. include/sbml/compress/crypt.h
  73. include/sbml/compress/ioapi.h
  74. include/sbml/compress/ioapi_mem.h
  75. include/sbml/compress/iowin32.h
  76. include/sbml/compress/unzip.h
  77. include/sbml/compress/zfstream.h
  78. include/sbml/compress/zip.h
  79. include/sbml/compress/zipfstream.h
  80. include/sbml/conversion/ConversionOption.h
  81. include/sbml/conversion/ConversionProperties.h
  82. include/sbml/conversion/SBMLConverter.h
  83. include/sbml/conversion/SBMLConverterRegister.h
  84. include/sbml/conversion/SBMLConverterRegistry.h
  85. include/sbml/conversion/SBMLConverterTypes.h
  86. include/sbml/conversion/SBMLFunctionDefinitionConverter.h
  87. include/sbml/conversion/SBMLIdConverter.h
  88. include/sbml/conversion/SBMLInferUnitsConverter.h
  89. include/sbml/conversion/SBMLInitialAssignmentConverter.h
  90. include/sbml/conversion/SBMLLevel1Version1Converter.h
  91. include/sbml/conversion/SBMLLevelVersionConverter.h
  92. include/sbml/conversion/SBMLLocalParameterConverter.h
  93. include/sbml/conversion/SBMLRateOfConverter.h
  94. include/sbml/conversion/SBMLReactionConverter.h
  95. include/sbml/conversion/SBMLRuleConverter.h
  96. include/sbml/conversion/SBMLStripPackageConverter.h
  97. include/sbml/conversion/SBMLUnitsConverter.h
  98. include/sbml/extension/ASTBasePlugin.h
  99. include/sbml/extension/ISBMLExtensionNamespaces.h
  100. include/sbml/extension/RegisterExtensions.h
  101. include/sbml/extension/SBMLDocumentPlugin.h
  102. include/sbml/extension/SBMLDocumentPluginNotRequired.h
  103. include/sbml/extension/SBMLExtension.h
  104. include/sbml/extension/SBMLExtensionException.h
  105. include/sbml/extension/SBMLExtensionNamespaces.h
  106. include/sbml/extension/SBMLExtensionRegister.h
  107. include/sbml/extension/SBMLExtensionRegistry.h
  108. include/sbml/extension/SBaseExtensionPoint.h
  109. include/sbml/extension/SBasePlugin.h
  110. include/sbml/extension/SBasePluginCreator.h
  111. include/sbml/extension/SBasePluginCreatorBase.h
  112. include/sbml/math/ASTNode.h
  113. include/sbml/math/ASTNodeType.h
  114. include/sbml/math/DefinitionURLRegistry.h
  115. include/sbml/math/FormulaFormatter.h
  116. include/sbml/math/FormulaParser.h
  117. include/sbml/math/FormulaTokenizer.h
  118. include/sbml/math/L3FormulaFormatter.h
  119. include/sbml/math/L3Parser.h
  120. include/sbml/math/L3ParserSettings.h
  121. include/sbml/math/MathML.h
  122. include/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h
  123. include/sbml/packages/l3v2extendedmath/common/l3v2extendedmathfwd.h
  124. include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h
  125. include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h
  126. include/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h
  127. include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h
  128. include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLError.h
  129. include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLErrorTable.h
  130. include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h
  131. include/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h
  132. include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.h
  133. include/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.h
  134. include/sbml/units/FormulaUnitsData.h
  135. include/sbml/units/UnitFormulaFormatter.h
  136. include/sbml/units/UnitKindList.h
  137. include/sbml/util/CallbackRegistry.h
  138. include/sbml/util/ElementFilter.h
  139. include/sbml/util/IdFilter.h
  140. include/sbml/util/IdList.h
  141. include/sbml/util/IdentifierTransformer.h
  142. include/sbml/util/List.h
  143. include/sbml/util/MathFilter.h
  144. include/sbml/util/MetaIdFilter.h
  145. include/sbml/util/PrefixTransformer.h
  146. include/sbml/util/Stack.h
  147. include/sbml/util/StringBuffer.h
  148. include/sbml/util/memory.h
  149. include/sbml/util/util.h
  150. include/sbml/validator/ConsistencyValidator.h
  151. include/sbml/validator/ConstraintMacros.h
  152. include/sbml/validator/IdentifierConsistencyValidator.h
  153. include/sbml/validator/InternalConsistencyValidator.h
  154. include/sbml/validator/L1CompatibilityValidator.h
  155. include/sbml/validator/L2v1CompatibilityValidator.h
  156. include/sbml/validator/L2v2CompatibilityValidator.h
  157. include/sbml/validator/L2v3CompatibilityValidator.h
  158. include/sbml/validator/L2v4CompatibilityValidator.h
  159. include/sbml/validator/L3v1CompatibilityValidator.h
  160. include/sbml/validator/L3v2CompatibilityValidator.h
  161. include/sbml/validator/MathMLConsistencyValidator.h
  162. include/sbml/validator/ModelingPracticeValidator.h
  163. include/sbml/validator/OverdeterminedValidator.h
  164. include/sbml/validator/SBMLExternalValidator.h
  165. include/sbml/validator/SBMLInternalValidator.h
  166. include/sbml/validator/SBMLValidator.h
  167. include/sbml/validator/SBOConsistencyValidator.h
  168. include/sbml/validator/StrictUnitConsistencyValidator.h
  169. include/sbml/validator/UnitConsistencyValidator.h
  170. include/sbml/validator/VConstraint.h
  171. include/sbml/validator/Validator.h
  172. include/sbml/xml/ExpatAttributes.h
  173. include/sbml/xml/ExpatHandler.h
  174. include/sbml/xml/ExpatParser.h
  175. include/sbml/xml/LibXMLAttributes.h
  176. include/sbml/xml/LibXMLHandler.h
  177. include/sbml/xml/LibXMLNamespaces.h
  178. include/sbml/xml/LibXMLParser.h
  179. include/sbml/xml/LibXMLTranscode.h
  180. include/sbml/xml/XMLAttributes.h
  181. include/sbml/xml/XMLBuffer.h
  182. include/sbml/xml/XMLConstructorException.h
  183. include/sbml/xml/XMLError.h
  184. include/sbml/xml/XMLErrorLog.h
  185. include/sbml/xml/XMLExtern.h
  186. include/sbml/xml/XMLFileBuffer.h
  187. include/sbml/xml/XMLHandler.h
  188. include/sbml/xml/XMLInputStream.h
  189. include/sbml/xml/XMLLogOverride.h
  190. include/sbml/xml/XMLMemoryBuffer.h
  191. include/sbml/xml/XMLNamespaces.h
  192. include/sbml/xml/XMLNode.h
  193. include/sbml/xml/XMLOutputStream.h
  194. include/sbml/xml/XMLParser.h
  195. include/sbml/xml/XMLToken.h
  196. include/sbml/xml/XMLTokenizer.h
  197. include/sbml/xml/XMLTriple.h
  198. include/sbml/xml/XercesAttributes.h
  199. include/sbml/xml/XercesHandler.h
  200. include/sbml/xml/XercesNamespaces.h
  201. include/sbml/xml/XercesParser.h
  202. include/sbml/xml/XercesTranscode.h
  203. lib/libsbml-static.a
  204. lib/libsbml.so
  205. lib/libsbml.so.5
  206. lib/libsbml.so.5.19.0
  207. libdata/pkgconfig/libsbml.pc
  208. lib/cmake/sbml-config-release.cmake
  209. lib/cmake/sbml-config-version.cmake
  210. lib/cmake/sbml-config.cmake
  211. lib/cmake/sbml-static-config-release.cmake
  212. lib/cmake/sbml-static-config-version.cmake
  213. lib/cmake/sbml-static-config.cmake
  214. lib/python3.8/site-packages/libsbml.pth
  215. lib/python3.8/site-packages/libsbml/_libsbml.so
  216. lib/python3.8/site-packages/libsbml/libsbml.py
  217. @comment %%RUBY_SITEARCHLIBDIR%%/libSBML.so
  218. share/examples/libsbml/CMakeLists.txt
  219. share/examples/libsbml/README.txt
  220. share/examples/libsbml/c/CMakeLists.txt
  221. share/examples/libsbml/c/FormulaGraphvizFormatter.h
  222. share/examples/libsbml/c/addCVTerms.c
  223. share/examples/libsbml/c/addModelHistory.c
  224. share/examples/libsbml/c/addingEvidenceCodes_1.c
  225. share/examples/libsbml/c/addingEvidenceCodes_2.c
  226. share/examples/libsbml/c/appendAnnotation.c
  227. share/examples/libsbml/c/convertSBML.c
  228. share/examples/libsbml/c/createExampleSBML.c
  229. share/examples/libsbml/c/drawMath.c
  230. share/examples/libsbml/c/echoSBML.c
  231. share/examples/libsbml/c/evaluateMath.c
  232. share/examples/libsbml/c/printAnnotation.c
  233. share/examples/libsbml/c/printMath.c
  234. share/examples/libsbml/c/printNotes.c
  235. share/examples/libsbml/c/printRegisteredPackages.c
  236. share/examples/libsbml/c/printSBML.c
  237. share/examples/libsbml/c/printSupported.c
  238. share/examples/libsbml/c/printUnits.c
  239. share/examples/libsbml/c/promoteParameters.c
  240. share/examples/libsbml/c/readSBML.c
  241. share/examples/libsbml/c/stripPackage.c
  242. share/examples/libsbml/c/translateL3Math.c
  243. share/examples/libsbml/c/translateMath.c
  244. share/examples/libsbml/c/unsetAnnotation.c
  245. share/examples/libsbml/c/unsetNotes.c
  246. share/examples/libsbml/c/util.c
  247. share/examples/libsbml/c/util.h
  248. share/examples/libsbml/c/validateSBML.c
  249. share/examples/libsbml/c++/CMakeLists.txt
  250. share/examples/libsbml/c++/addCVTerms.cpp
  251. share/examples/libsbml/c++/addCustomValidator.cpp
  252. share/examples/libsbml/c++/addModelHistory.cpp
  253. share/examples/libsbml/c++/addingEvidenceCodes_1.cpp
  254. share/examples/libsbml/c++/addingEvidenceCodes_2.cpp
  255. share/examples/libsbml/c++/appendAnnotation.cpp
  256. share/examples/libsbml/c++/callExternalValidator.cpp
  257. share/examples/libsbml/c++/convertReactions.cpp
  258. share/examples/libsbml/c++/convertSBML.cpp
  259. share/examples/libsbml/c++/convertToL1V1.cpp
  260. share/examples/libsbml/c++/createExampleSBML.cpp
  261. share/examples/libsbml/c++/echoSBML.cpp
  262. share/examples/libsbml/c++/getAllElementsWithNotes.cpp
  263. share/examples/libsbml/c++/inferUnits.cpp
  264. share/examples/libsbml/c++/inlineFunctionDefintions.cpp
  265. share/examples/libsbml/c++/layout/CMakeLists.txt
  266. share/examples/libsbml/c++/layout/addLayout.cpp
  267. share/examples/libsbml/c++/layout/convertLayout.cpp
  268. share/examples/libsbml/c++/layout/example1-L3.cpp
  269. share/examples/libsbml/c++/layout/example1.cpp
  270. share/examples/libsbml/c++/layout/example2-L3.cpp
  271. share/examples/libsbml/c++/layout/example2.cpp
  272. share/examples/libsbml/c++/layout/example3-L3.cpp
  273. share/examples/libsbml/c++/layout/example3.cpp
  274. share/examples/libsbml/c++/printAnnotation.cpp
  275. share/examples/libsbml/c++/printMath.cpp
  276. share/examples/libsbml/c++/printNotes.cpp
  277. share/examples/libsbml/c++/printRegisteredPackages.cpp
  278. share/examples/libsbml/c++/printSBML.cpp
  279. share/examples/libsbml/c++/printSupported.cpp
  280. share/examples/libsbml/c++/printUnits.cpp
  281. share/examples/libsbml/c++/promoteParameters.cpp
  282. share/examples/libsbml/c++/readSBML.cpp
  283. share/examples/libsbml/c++/renameSId.cpp
  284. share/examples/libsbml/c++/rngvalidator.cpp
  285. share/examples/libsbml/c++/setIdFromNames.cpp
  286. share/examples/libsbml/c++/setNamesFromIds.cpp
  287. share/examples/libsbml/c++/stripPackage.cpp
  288. share/examples/libsbml/c++/translateL3Math.cpp
  289. share/examples/libsbml/c++/translateMath.cpp
  290. share/examples/libsbml/c++/unsetAnnotation.cpp
  291. share/examples/libsbml/c++/unsetNotes.cpp
  292. share/examples/libsbml/c++/util.c
  293. share/examples/libsbml/c++/util.h
  294. share/examples/libsbml/c++/validateSBML.cpp
  295. share/examples/libsbml/csharp/CMakeLists.txt
  296. share/examples/libsbml/csharp/GetAllElementsWithNotes.cs
  297. share/examples/libsbml/csharp/SetIdFromNames.cs
  298. share/examples/libsbml/csharp/addCVTerms.cs
  299. share/examples/libsbml/csharp/addCustomValidator.cs
  300. share/examples/libsbml/csharp/addModelHistory.cs
  301. share/examples/libsbml/csharp/addingEvidenceCodes_1.cs
  302. share/examples/libsbml/csharp/addingEvidenceCodes_2.cs
  303. share/examples/libsbml/csharp/appendAnnotation.cs
  304. share/examples/libsbml/csharp/callExternalValidator.cs
  305. share/examples/libsbml/csharp/convertSBML.cs
  306. share/examples/libsbml/csharp/createExampleSBML.cs
  307. share/examples/libsbml/csharp/echoSBML.cs
  308. share/examples/libsbml/csharp/evaluateCustomMath.cs
  309. share/examples/libsbml/csharp/inlineInitialAssignments.cs
  310. share/examples/libsbml/csharp/layout/CMakeLists.txt
  311. share/examples/libsbml/csharp/layout/example1-L3.cs
  312. share/examples/libsbml/csharp/printAnnotation.cs
  313. share/examples/libsbml/csharp/printMath.cs
  314. share/examples/libsbml/csharp/printNotes.cs
  315. share/examples/libsbml/csharp/printRegisteredPackages.cs
  316. share/examples/libsbml/csharp/printSBML.cs
  317. share/examples/libsbml/csharp/printUnits.cs
  318. share/examples/libsbml/csharp/printsupported.cs
  319. share/examples/libsbml/csharp/promoteParameters.cs
  320. share/examples/libsbml/csharp/readSBML.cs
  321. share/examples/libsbml/csharp/replaceOneFD.cs
  322. share/examples/libsbml/csharp/stripPackage.cs
  323. share/examples/libsbml/csharp/translateMath.cs
  324. share/examples/libsbml/csharp/unsetAnnotation.cs
  325. share/examples/libsbml/csharp/unsetNotes.cs
  326. share/examples/libsbml/csharp/validateSBML.cs
  327. share/examples/libsbml/java/CMakeLists.txt
  328. share/examples/libsbml/java/README.txt
  329. share/examples/libsbml/java/addCVTerms.java
  330. share/examples/libsbml/java/addCustomValidator.java
  331. share/examples/libsbml/java/addModelHistory.java
  332. share/examples/libsbml/java/addingEvidenceCodes_1.java
  333. share/examples/libsbml/java/addingEvidenceCodes_2.java
  334. share/examples/libsbml/java/appendAnnotation.java
  335. share/examples/libsbml/java/callExternalValidator.java
  336. share/examples/libsbml/java/convertSBML.java
  337. share/examples/libsbml/java/createExampleSBML.java
  338. share/examples/libsbml/java/echoSBML.java
  339. share/examples/libsbml/java/evaluateCustomMath.java
  340. share/examples/libsbml/java/evaluateMath.java
  341. share/examples/libsbml/java/getAllElementsWithNotes.java
  342. share/examples/libsbml/java/inlineInitialAssignments.java
  343. share/examples/libsbml/java/layout/CMakeLists.txt
  344. share/examples/libsbml/java/layout/SimpleLayoutConverter.java
  345. share/examples/libsbml/java/layout/layout_example1.java
  346. share/examples/libsbml/java/layout/layout_example1_L3.java
  347. share/examples/libsbml/java/printAnnotation.java
  348. share/examples/libsbml/java/printMath.java
  349. share/examples/libsbml/java/printNotes.java
  350. share/examples/libsbml/java/printRegisteredPackages.java
  351. share/examples/libsbml/java/printSBML.java
  352. share/examples/libsbml/java/printUnits.java
  353. share/examples/libsbml/java/printsupported.java
  354. share/examples/libsbml/java/promoteParameters.java
  355. share/examples/libsbml/java/readSBML.java
  356. share/examples/libsbml/java/replaceOneFD.java
  357. share/examples/libsbml/java/setIdFromNames.java
  358. share/examples/libsbml/java/stripPackage.java
  359. share/examples/libsbml/java/translateMath.java
  360. share/examples/libsbml/java/unsetAnnotation.java
  361. share/examples/libsbml/java/unsetNotes.java
  362. share/examples/libsbml/java/validateSBML.java
  363. share/examples/libsbml/javascript/addCVTerms.js
  364. share/examples/libsbml/javascript/addModelHistory.js
  365. share/examples/libsbml/javascript/addingEvidenceCodes_1.js
  366. share/examples/libsbml/javascript/addingEvidenceCodes_2.js
  367. share/examples/libsbml/javascript/appendAnnotation.js
  368. share/examples/libsbml/javascript/callExternalValidator.js
  369. share/examples/libsbml/javascript/convertSBML.js
  370. share/examples/libsbml/javascript/createExampleSBML.js
  371. share/examples/libsbml/javascript/echoSBML.js
  372. share/examples/libsbml/javascript/printAnnotation.js
  373. share/examples/libsbml/javascript/printMath.js
  374. share/examples/libsbml/javascript/printNotes.js
  375. share/examples/libsbml/javascript/printRegisteredPackages.js
  376. share/examples/libsbml/javascript/printSBML.js
  377. share/examples/libsbml/javascript/printUnits.js
  378. share/examples/libsbml/javascript/printsupported.js
  379. share/examples/libsbml/javascript/promoteParameters.js
  380. share/examples/libsbml/javascript/readSBML.js
  381. share/examples/libsbml/javascript/stripPackage.js
  382. share/examples/libsbml/javascript/translateMath.js
  383. share/examples/libsbml/javascript/unsetAnnotation.js
  384. share/examples/libsbml/javascript/unsetNotes.js
  385. share/examples/libsbml/javascript/validateSBML.js
  386. share/examples/libsbml/layout-package.cmake
  387. share/examples/libsbml/layout/README.txt
  388. share/examples/libsbml/perl/addCVTerms.pl
  389. share/examples/libsbml/perl/addCustomValidator.pl
  390. share/examples/libsbml/perl/addModelHistory.pl
  391. share/examples/libsbml/perl/addingEvidenceCodes_1.pl
  392. share/examples/libsbml/perl/addingEvidenceCodes_2.pl
  393. share/examples/libsbml/perl/appendAnnotation.pl
  394. share/examples/libsbml/perl/callExternalValidator.pl
  395. share/examples/libsbml/perl/convertSBML.pl
  396. share/examples/libsbml/perl/createExampleSBML.pl
  397. share/examples/libsbml/perl/echoSBML.pl
  398. share/examples/libsbml/perl/evaluateMath.pl
  399. share/examples/libsbml/perl/extractReactionInfo.pl
  400. share/examples/libsbml/perl/extractReactions.pl
  401. share/examples/libsbml/perl/layout/example1-L3.pl
  402. share/examples/libsbml/perl/printAnnotation.pl
  403. share/examples/libsbml/perl/printMath.pl
  404. share/examples/libsbml/perl/printNotes.pl
  405. share/examples/libsbml/perl/printRegisteredPackages.pl
  406. share/examples/libsbml/perl/printSBML.pl
  407. share/examples/libsbml/perl/printUnits.pl
  408. share/examples/libsbml/perl/printsupported.pl
  409. share/examples/libsbml/perl/promoteParameters.pl
  410. share/examples/libsbml/perl/readSBML.pl
  411. share/examples/libsbml/perl/renameSId.pl
  412. share/examples/libsbml/perl/stripPackage.pl
  413. share/examples/libsbml/perl/translateMath.pl
  414. share/examples/libsbml/perl/unsetAnnotation.pl
  415. share/examples/libsbml/perl/unsetNotes.pl
  416. share/examples/libsbml/perl/validateSBML.pl
  417. share/examples/libsbml/php/createExampleSBML.php
  418. share/examples/libsbml/php/echoSBML.php
  419. share/examples/libsbml/php/validateSBML.php
  420. share/examples/libsbml/python/addCVTerms.py
  421. share/examples/libsbml/python/addCustomValidator.py
  422. share/examples/libsbml/python/addModelHistory.py
  423. share/examples/libsbml/python/addingEvidenceCodes_1.py
  424. share/examples/libsbml/python/addingEvidenceCodes_2.py
  425. share/examples/libsbml/python/append_to_note.py
  426. share/examples/libsbml/python/appendAnnotation.py
  427. share/examples/libsbml/python/callExternalValidator.py
  428. share/examples/libsbml/python/convertSBML.py
  429. share/examples/libsbml/python/createExampleSBML.py
  430. share/examples/libsbml/python/createSimpleModel.py
  431. share/examples/libsbml/python/echoSBML.py
  432. share/examples/libsbml/python/evaluateCustomMath.py
  433. share/examples/libsbml/python/getAllElementsWithNotes.py
  434. share/examples/libsbml/python/inlineFunctionDefinitions.py
  435. share/examples/libsbml/python/inlineInitialAssignments.py
  436. share/examples/libsbml/python/layout/convertLayout.py
  437. share/examples/libsbml/python/layout/example1-L3.py
  438. share/examples/libsbml/python/layout/example1.py
  439. share/examples/libsbml/python/printAnnotation.py
  440. share/examples/libsbml/python/printMath.py
  441. share/examples/libsbml/python/printNotes.py
  442. share/examples/libsbml/python/printRegisteredPackages.py
  443. share/examples/libsbml/python/printSBML.py
  444. share/examples/libsbml/python/printUnits.py
  445. share/examples/libsbml/python/printsupported.py
  446. share/examples/libsbml/python/promoteParameters.py
  447. share/examples/libsbml/python/readSBML.py
  448. share/examples/libsbml/python/renameSId.py
  449. share/examples/libsbml/python/replaceOneFD.py
  450. share/examples/libsbml/python/setIdFromNames.py
  451. share/examples/libsbml/python/stringInput.py
  452. share/examples/libsbml/python/stripPackage.py
  453. share/examples/libsbml/python/translateMath.py
  454. share/examples/libsbml/python/unsetAnnotation.py
  455. share/examples/libsbml/python/unsetNotes.py
  456. share/examples/libsbml/python/validateSBML.py
  457. share/examples/libsbml/python/validateSBMLWithCallback.py
  458. share/examples/libsbml/r/addCVTerms.R
  459. share/examples/libsbml/r/addModelHistory.R
  460. share/examples/libsbml/r/addingEvidenceCodes_1.R
  461. share/examples/libsbml/r/addingEvidenceCodes_2.R
  462. share/examples/libsbml/r/appendAnnotation.R
  463. share/examples/libsbml/r/convertSBML.R
  464. share/examples/libsbml/r/createExampleSBML.R
  465. share/examples/libsbml/r/echoSBML.R
  466. share/examples/libsbml/r/evaluateMath.R
  467. share/examples/libsbml/r/printAnnotation.R
  468. share/examples/libsbml/r/printMath.R
  469. share/examples/libsbml/r/printNotes.R
  470. share/examples/libsbml/r/printRegisteredPackages.R
  471. share/examples/libsbml/r/printSBML.R
  472. share/examples/libsbml/r/printSupported.R
  473. share/examples/libsbml/r/printUnits.R
  474. share/examples/libsbml/r/promoteParameters.R
  475. share/examples/libsbml/r/readSBML.R
  476. share/examples/libsbml/r/stripPackage.R
  477. share/examples/libsbml/r/translateMath.R
  478. share/examples/libsbml/r/unsetAnnotation.R
  479. share/examples/libsbml/r/unsetNotes.R
  480. share/examples/libsbml/r/validateSBML.R
  481. share/examples/libsbml/ruby/addCVTerms.rb
  482. share/examples/libsbml/ruby/addCustomValidator.rb
  483. share/examples/libsbml/ruby/addModelHistory.rb
  484. share/examples/libsbml/ruby/addingEvidenceCodes_1.rb
  485. share/examples/libsbml/ruby/addingEvidenceCodes_2.rb
  486. share/examples/libsbml/ruby/appendAnnotation.rb
  487. share/examples/libsbml/ruby/callExternalValidator.rb
  488. share/examples/libsbml/ruby/convertSBML.rb
  489. share/examples/libsbml/ruby/createExampleSBML.rb
  490. share/examples/libsbml/ruby/echoSBML.rb
  491. share/examples/libsbml/ruby/layout/example1-L3.rb
  492. share/examples/libsbml/ruby/printAnnotation.rb
  493. share/examples/libsbml/ruby/printMath.rb
  494. share/examples/libsbml/ruby/printNotes.rb
  495. share/examples/libsbml/ruby/printRegisteredPackages.rb
  496. share/examples/libsbml/ruby/printSBML.rb
  497. share/examples/libsbml/ruby/printUnits.rb
  498. share/examples/libsbml/ruby/printsupported.rb
  499. share/examples/libsbml/ruby/promoteParameters.rb
  500. share/examples/libsbml/ruby/readSBML.rb
  501. share/examples/libsbml/ruby/stripPackage.rb
  502. share/examples/libsbml/ruby/translateMath.rb
  503. share/examples/libsbml/ruby/unsetAnnotation.rb
  504. share/examples/libsbml/ruby/unsetNotes.rb
  505. share/examples/libsbml/ruby/validateSBML.rb
  506. share/examples/libsbml/sample-models/README.txt
  507. share/examples/libsbml/sample-models/from-spec/level-2/README.txt
  508. share/examples/libsbml/sample-models/from-spec/level-2/algebraicrules.xml
  509. share/examples/libsbml/sample-models/from-spec/level-2/assignmentrules.xml
  510. share/examples/libsbml/sample-models/from-spec/level-2/boundarycondition.xml
  511. share/examples/libsbml/sample-models/from-spec/level-2/delay.xml
  512. share/examples/libsbml/sample-models/from-spec/level-2/dimerization.xml
  513. share/examples/libsbml/sample-models/from-spec/level-2/enzymekinetics.xml
  514. share/examples/libsbml/sample-models/from-spec/level-2/events.xml
  515. share/examples/libsbml/sample-models/from-spec/level-2/functiondef.xml
  516. share/examples/libsbml/sample-models/from-spec/level-2/multicomp.xml
  517. share/examples/libsbml/sample-models/from-spec/level-2/overdetermined.xml
  518. share/examples/libsbml/sample-models/from-spec/level-2/twodimensional.xml
  519. share/examples/libsbml/sample-models/from-spec/level-2/units.xml
  520. share/examples/libsbml/sample-models/from-spec/level-3/README.txt
  521. share/examples/libsbml/sample-models/from-spec/level-3/algebraicrules.xml
  522. share/examples/libsbml/sample-models/from-spec/level-3/assignmentrules.xml
  523. share/examples/libsbml/sample-models/from-spec/level-3/boundarycondition.xml
  524. share/examples/libsbml/sample-models/from-spec/level-3/conversionfactor1.xml
  525. share/examples/libsbml/sample-models/from-spec/level-3/conversionfactor2.xml
  526. share/examples/libsbml/sample-models/from-spec/level-3/delay.xml
  527. share/examples/libsbml/sample-models/from-spec/level-3/dimerization.xml
  528. share/examples/libsbml/sample-models/from-spec/level-3/enzymekineticext.xml
  529. share/examples/libsbml/sample-models/from-spec/level-3/enzymekinetics.xml
  530. share/examples/libsbml/sample-models/from-spec/level-3/events.xml
  531. share/examples/libsbml/sample-models/from-spec/level-3/fullydeterminedevent.xml
  532. share/examples/libsbml/sample-models/from-spec/level-3/functiondef.xml
  533. share/examples/libsbml/sample-models/from-spec/level-3/membrane.xml
  534. share/examples/libsbml/sample-models/from-spec/level-3/multicomp.xml
  535. share/examples/libsbml/sample-models/from-spec/level-3/overdetermined.xml
  536. share/examples/libsbml/sample-models/from-spec/level-3/twoalgebraicrules.xml
  537. share/examples/libsbml/sample-models/from-spec/level-3/twodimensional.xml
  538. share/examples/libsbml/xslt/layout/layout2svg.xsl
  539. @owner
  540. @group
  541. @mode
Collapse this list.
Dependency lines:
  • libsbml>0:biology/libsbml
To install the port:
cd /usr/ports/biology/libsbml/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/libsbml
  • pkg install libsbml
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libsbml
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1607539653 SHA256 (libSBML-5.19.0-core-src.tar.gz) = 9d2837378e77a8732588d481327bb10c721ec06dd6cd72f8041d67d3b53d4e56 SIZE (libSBML-5.19.0-core-src.tar.gz) = 14600103

Packages (timestamps in pop-ups are UTC):
libsbml
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest5.20.25.20.25.19.05.20.25.20.2-5.19.0-
FreeBSD:13:quarterly5.20.25.20.25.20.05.20.25.20.25.20.25.20.25.20.2
FreeBSD:14:latest5.20.25.20.25.19.0_25.20.25.20.25.20.0-5.20.0
FreeBSD:14:quarterly5.20.25.20.2-5.20.25.20.25.20.25.20.25.20.2
FreeBSD:15:latest5.20.25.20.2n/a5.20.2n/a5.20.25.20.25.20.2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. swig : devel/swig
  2. cmake : devel/cmake
  3. ninja : devel/ninja
  4. python3.8 : lang/python38
Runtime dependencies:
  1. python3.8 : lang/python38
Library dependencies:
  1. libxml2.so : textproc/libxml2
This port is required by:
for Build
  1. biology/libsedml
for Libraries
  1. biology/libnuml
for Run
  1. biology/libsedml

Configuration Options:
===> The following configuration options are available for libsbml-5.19.0_2: EXAMPLES=on: Build and/or install examples PYTHON=on: Python bindings or support RUBY=off: Ruby bindings or support ====> XML format or parser support: you have to select exactly one of them EXPAT=off: XML parser support via Expat LIBXML2=on: XML parser support via libxml2 XERCES=off: XML parser support via Xerces ===> Use 'make config' to modify these settings
Options name:
biology_libsbml
USES:
cmake iconv:build pathfix gnome python:3.6+
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (22 items)
Collapse this list.
  1. http://downloads.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  2. http://excellmedia.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  3. http://freefr.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  4. http://jaist.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  5. http://nchc.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  6. http://netcologne.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  7. http://netix.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  8. http://superb-dca2.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  9. http://superb-sea2.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  10. http://ufpr.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  11. http://vorboss.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  12. https://downloads.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  13. https://excellmedia.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  14. https://freefr.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  15. https://jaist.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  16. https://nchc.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  17. https://netcologne.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  18. https://netix.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  19. https://superb-dca2.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  20. https://superb-sea2.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  21. https://ufpr.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
  22. https://vorboss.dl.sourceforge.net/project/sbml/libsbml/5.19.0/stable/
Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
5.19.0_2
10 Apr 2022 19:47:23
commit hash: 035e778ee53345464c2d7466a3895e17073ad1f6commit hash: 035e778ee53345464c2d7466a3895e17073ad1f6commit hash: 035e778ee53345464c2d7466a3895e17073ad1f6commit hash: 035e778ee53345464c2d7466a3895e17073ad1f6 files touched by this commit
Charlie Li (vishwin) search for other commits by this committer
textproc/libxml2: bump all LIB_DEPENDS consumers

This is a separate and direct commit to quarterly as PORTREVISIONs
may not match from main.

PR: 262853, 262940, 262877
Approved by: fluffy (mentor)

Number of commits found: 1