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Port details
libgff GFF/GTF parsing library based on GCLib
2.0.0 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.0.0Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-12-05 20:51:11
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: BSL
WWW:
https://github.com/COMBINE-lab/libgff
Description:
This is an attempt to perform a simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase. There are not many (any?) relatively lightweight GTF/GFF parsers exposing a C++ interface, and the goal of this library is to provide this functionality without the necessity of drawing in a heavy-weight dependency like SeqAn. Note: This library draws directly from the code in GFFRead and GCLib, and exists primarily to remove functionality (and hence code) that is unnecessary for our downstream purposes. In the future, it may be appropriate to just replace this library wholesale with GCLib.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (20 items)
Collapse this list.
  1. /usr/local/share/licenses/libgff-2.0.0/catalog.mk
  2. /usr/local/share/licenses/libgff-2.0.0/LICENSE
  3. /usr/local/share/licenses/libgff-2.0.0/BSL
  4. include/GArgs.h
  5. include/GBase.h
  6. include/GFaSeqGet.h
  7. include/GFastaIndex.h
  8. include/GHash.hh
  9. include/GList.hh
  10. include/GStr.h
  11. include/GVec.hh
  12. include/codons.h
  13. include/gdna.h
  14. include/gff.h
  15. lib/libgff.a
  16. lib/libgff/cmake/libgffConfig.cmake
  17. lib/libgff/cmake/libgffConfigVersion.cmake
  18. @owner
  19. @group
  20. @mode
Collapse this list.
Dependency lines:
  • libgff>0:biology/libgff
To install the port:
cd /usr/ports/biology/libgff/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/libgff
  • pkg install libgff
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: libgff
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1631451501 SHA256 (COMBINE-lab-libgff-v2.0.0_GH0.tar.gz) = 7656b19459a7ca7d2fd0fcec4f2e0fd0deec1b4f39c703a114e8f4c22d82a99c SIZE (COMBINE-lab-libgff-v2.0.0_GH0.tar.gz) = 102152

Packages (timestamps in pop-ups are UTC):
libgff
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.0.02.0.0-2.0.02.0.0---
FreeBSD:13:quarterly2.0.02.0.02.0.02.0.02.0.02.0.02.0.02.0.0
FreeBSD:14:latest2.0.02.0.02.0.02.0.02.0.02.0.0-2.0.0
FreeBSD:14:quarterly2.0.02.0.0-2.0.02.0.02.0.02.0.02.0.0
FreeBSD:15:latest2.0.02.0.0n/a2.0.0n/a2.0.02.0.02.0.0
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
This port is required by:
for Build
  1. biology/salmon

Configuration Options:
No options to configure
Options name:
biology_libgff
USES:
cmake
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/COMBINE-lab/libgff/tar.gz/v2.0.0?dummy=/
Collapse this list.

Number of commits found: 3

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.0.0
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.0.0
05 Dec 2021 20:50:42
commit hash: 864d4fdd1804d2d4f46619f781e397b9ccdf1639commit hash: 864d4fdd1804d2d4f46619f781e397b9ccdf1639commit hash: 864d4fdd1804d2d4f46619f781e397b9ccdf1639commit hash: 864d4fdd1804d2d4f46619f781e397b9ccdf1639 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/libgff: GFF/GTF parsing library based on GCLib

This is an attempt to perform a simple "libraryfication" of the GFF/GTF
parsing code that is used in GFFRead codebase. There are not many
(any?) relatively lightweight GTF/GFF parsers exposing a C++ interface,
and the goal of this library is to provide this functionality without
the necessity of drawing in a heavy-weight dependency like SeqAn. Note:
This library draws directly from the code in GFFRead and GCLib, and
exists primarily to remove functionality (and hence code) that is
unnecessary for our downstream purposes. In the future, it may be
appropriate to just replace this library wholesale with GCLib.

Number of commits found: 3