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Port details
lamarc Package of programs for computing population parameters
2.1.8_1,1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2.1.8_1,1Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-08-07 05:17:58
Last Update: 2023-08-18 06:57:13
Commit Hash: bb82d0e
License: APACHE20
WWW:
https://evolution.genetics.washington.edu/lamarc/
Description:
LAMARC (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) is a package of programs for computing population parameters such as population size, population growth rate and migration rates. It does this by using likelihoods for samples of data (sequences, microsatellites, and electrophoretic polymorphisms) from populations.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (4 items)
Collapse this list.
  1. bin/lamarc
  2. /usr/local/share/licenses/lamarc-2.1.8_1,1/catalog.mk
  3. /usr/local/share/licenses/lamarc-2.1.8_1,1/LICENSE
  4. /usr/local/share/licenses/lamarc-2.1.8_1,1/APACHE20
Collapse this list.
Dependency lines:
  • lamarc>0:biology/lamarc
To install the port:
cd /usr/ports/biology/lamarc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/lamarc
  • pkg install lamarc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: lamarc
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (lamarc-2.1.8-src.tar.gz) = 73ca99a87c5d40577c3d3fbc25b72e3507bfce22f5376dfec90fd3a90b085281 SIZE (lamarc-2.1.8-src.tar.gz) = 24919620

Packages (timestamps in pop-ups are UTC):
lamarc
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,1-2.1.8_1,1-
FreeBSD:13:quarterly2.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,12.1.8_1,1
FreeBSD:14:latest--2.1.8_1,1--2.1.8_1,1-2.1.8_1,1
FreeBSD:14:quarterly--------
FreeBSD:15:latest--n/a-n/a---
This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for lamarc-2.1.8_1,1: DOCS=on: Build and/or install documentation WXGTK=off: wxGTK GUI toolkit support ===> Use 'make config' to modify these settings
Options name:
biology_lamarc
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://evolution.genetics.washington.edu/lamarc/download/
Collapse this list.
Port Moves
  • port moved here from biology/recombine on 2024-01-18
    REASON: Has expired: Upstream advises to use biology/lamarc

Number of commits found: 38

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2.1.8_1,1
18 Aug 2023 06:57:13
commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/lamarc: Mark BROKEN on 14

Fails to compile with:
error: no matching function for call to 'make_pair'

Sponsored by:	The FreeBSD Foundation
2.1.8_1,1
31 Dec 2022 03:54:58
commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9 files touched by this commit
Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/lamarc: Refactor after wxgtk28 removal

- Pet portclippy
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2.1.8_1,1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1.8_1,1
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2.1.8_1,1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2.1.8_1,1
25 Aug 2018 03:13:38
Revision:477992Original commit files touched by this commit
tobik search for other commits by this committer
biology/lamarc: Fix build with Clang 6

src/tools/mathx.cpp:781:12: error: no matching function for call to 'make_pair'
    return std::make_pair<DoubleVec1d, DoubleVec2d>(eigvals, eigvecs);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/utility:639:1: note: candidate function not viable: no known
conversion from 'DoubleVec1d' (aka 'vector<double>') to
'std::__1::vector<double, std::__1::allocator<double> > &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/lamarc-2.1.8_1,1.log
2.1.8_1,1
18 Dec 2016 04:34:33
Revision:428831Original commit files touched by this commit
marino search for other commits by this committer
biology/lamarc: Fix build on DF (taken from dports)
2.1.8_1,1
18 Aug 2016 09:31:58
Revision:420392Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Switch to options helpers
- Regenerate patches with `make makepatch`
- Mark WXGTK option broken: does not build:
src/convErr/gc_errhandling.cpp:75:12: error: cannot initialize return object of
type 'const char *' with an rvalue of type 'const wxChar *' (aka 'const wchar_t
*')
2.1.8_1,1
29 Dec 2015 14:30:47
Revision:404743Original commit files touched by this commit
mat search for other commits by this committer
Cleanup GH_* and variables order.

Sponsored by:	Absolight
2.1.8_1,1
16 Sep 2015 19:51:28
Revision:397077Original commit files touched by this commit
bapt search for other commits by this committer
Remove ansi version fo wxGTK 2.8 and only keep the unicode version

All applications in the ports tree works correctly with unicode version of wxGTK

Newer version of wxGTK are unicode only (3.0+)

Note that now WX_UNICODE macro is noop
2.1.8,1
13 Sep 2015 18:45:47
Revision:396851Original commit files touched by this commit
bapt search for other commits by this committer
Enfoce unicode version of wxGTK
2.1.8,1
30 Dec 2013 20:55:19
Revision:338168Original commit files touched by this commit
ohauer search for other commits by this committer
- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
- svn move Templates/Licenses/AL2 Templates/Licenses/APACHE20
- add APACHE10 and APACHE11 to Mk/bsd.licenses.db.mk
- add entry in UPDATING
- bulk change all ports AL2 => APACHE20

- math/openfst/pkg-plist: remove share/licenses/openfst-1.3.4

PR:		ports/184785
Submitted by:	ohauer
Reviewed by:	tabthorpe
Approved by:	portmgr (tabthorpe@)
2.1.8,1
26 Nov 2013 15:37:05
Revision:334945Original commit files touched by this commit
wg search for other commits by this committer
biology/lamarc: fix build on current

PR:		ports/184219
Submitted by:	KATO Tsuguru <tkato432 yahoo.com>
2.1.8,1
25 Sep 2013 00:54:09
Revision:328226Original commit files touched by this commit
bdrewery search for other commits by this committer
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
2.1.8,1
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
2.1.8
14 Aug 2013 22:35:54
Revision:324744Original commit files touched by this commit Sanity Test Failure
ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
2.1.8,1
19 Jun 2013 15:39:19
Revision:321281Original commit files touched by this commit
bsam search for other commits by this committer
. trim Makefile headers;
. remove the indefinite article from COMMENT.
2.1.8,1
03 Dec 2012 11:27:47
Revision:308138Original commit files touched by this commit
gahr search for other commits by this committer
- Fix build with clang

Feature safe:	yes
2.1.8,1
17 Jun 2012 20:22:32
Original commit files touched by this commit
sylvio search for other commits by this committer
- Update to version 2.1.8

Remove file:
files/patch-Makefile.in
files/patch-configure
files/patch-src__control__defaults.h
pkg-plist

PR:             ports/168994
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
2.1.5,1
03 Jun 2012 12:14:38
Original commit files touched by this commit
cs search for other commits by this committer
Set maintainership back to ports@
2.1.5,1
20 May 2012 12:04:26
Original commit files touched by this commit
cs search for other commits by this committer
Remove non-serving mirror
2.1.5,1
09 Jan 2012 15:41:08
Original commit files touched by this commit
tabthorpe search for other commits by this committer
- The proper acronym for Apache Software License 2 is really AL2
- Thanks to crees@ for generating the initial patch

PR:             ports/163521
Submitted by:   Pedro Giffuni <pfg apache.org>
Hat:            portmgr
Exp run by:     pav
2.1.5,1
15 Sep 2011 12:33:27
Original commit files touched by this commit
cs search for other commits by this committer
Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)
2.1.5
11 Aug 2011 19:20:17
Original commit files touched by this commit Sanity Test Failure
kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
2.1.5,1
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
2.1.5,1
04 Aug 2010 06:30:07
Original commit files touched by this commit
lwhsu search for other commits by this committer
- Update to 2.1.5
- Pass maintainership to submitter

PR:             ports/149247
Submitted by:   C-S <c-s AT c-s.li>
2.1.3,1
10 Feb 2010 21:47:48
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Reset more ports I don't use anymore
2.1.3,1
16 May 2009 06:27:56
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Mark most of my ports MAKE_JOBS_SAFE=yes

Tested by: several builds in P6 TB
2.1.3,1
31 Jul 2008 16:18:42
Original commit files touched by this commit
pgollucci search for other commits by this committer
- Update to 2.1.3

Approved by:    gabor (mentor)
2.1.2c,1
23 Jul 2008 02:43:55
Original commit files touched by this commit
pgollucci search for other commits by this committer
Update my ports to my freebsd address

Approved by:    araujo (mentor)
2.1.2c,1
11 Jul 2008 17:24:16
Original commit files touched by this commit
araujo search for other commits by this committer
- Update to 2.1.2c.
- Pass maintainership to submitter.

PR:             ports/125497
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
2.1.2b,1
23 Oct 2007 23:07:19
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.1.2b

PR:             117336
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
2.1,1
08 Oct 2007 13:04:51
Original commit files touched by this commit
miwi search for other commits by this committer
- Update to 2.1

PR:             116017
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
2001.08.06_1
25 Jan 2007 11:10:43
Original commit files touched by this commit
vd search for other commits by this committer
Get rid of biology/coalesce dependency, it is deprecated and will be removed
shortly.
2001.08.06
20 Nov 2004 08:09:49
Original commit files touched by this commit
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
2001.08.06
07 Mar 2003 05:56:43
Original commit files touched by this commit
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
07 Aug 2001 09:17:58
commit hash: fp1.16924@dev.null.freshports.orgcommit hash: fp1.16924@dev.null.freshports.orgcommit hash: fp1.16924@dev.null.freshports.orgcommit hash: fp1.16924@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Add lamarc 2001.08.06,   a package of programs for computing   population
parameters.    

Number of commits found: 38