| non port: biology/jalview/Makefile |
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SVNWeb
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Number of commits found: 21 |
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Sun, 18 Jun 2023
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[ 09:58 Yuri Victorovich (yuri)  ]    4301fdb
biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1
The gradle upgrade seems to have broken jalview.
Reported by: fallout
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Wed, 12 Oct 2022
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[ 06:58 Yuri Victorovich (yuri) ] 3a7900f
biology/jalview: Update 2.11.1.4 -> 2.11.2.5
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Thu, 30 Sep 2021
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[ 21:23 Rene Ladan (rene) ] 620968a (Only the first 10 of 399 ports in this commit are shown above. )
cleanup: drop support for EOL FreeBSD 11.X
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11
Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*
Reviewed by: doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
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Sun, 27 Jun 2021
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[ 09:30 Guangyuan Yang (ygy) ] 389294d
biology/jalview: Fix build
When switching the build dependency from devel/gradle to devel/gradle6,
the build is accidentally broken. This attempts to revert part of the
change and fix build.
Fixes: 55044a2200a4c42b6b653349f0a65dfca3f96f36
Approved by: lwhsu (mentor, implicit), portmgr (fix build)
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[ 01:51 Guangyuan Yang (ygy) ] 55044a2
devel/gradle6: New port
devel/gradle needs to be updated to 7.x, while some ports build failed
under the newer version, including:
- biology/jalview
- biology/igv
Updated them to use this devel/gradle6 until they officially support 7.x.
No functional changes for these ports.
Approved by: lwhsu (mentor)
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Sat, 5 Jun 2021
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[ 18:53 Yuri Victorovich (yuri) ] 8b8c127
biology/jalview: Broken on 11
Also fix number of lines in pkg-descr, and replace space with tab.
Reported by: fallout
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Sat, 1 May 2021
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[ 17:55 Tobias Kortkamp (tobik) ] 6707a3c (Only the first 10 of 47 ports in this commit are shown above. )
Clean up some things
- Fix typos
- Remove duplicate variables
- Remove nop variables
- Clean up commented PORTREVISION
- Add missing USES
Reported by: portscan
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Sun, 25 Apr 2021
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[ 23:00 Yuri Victorovich (yuri) ] af49fbe
biology/jalview: Update 2.07 -> 2.11.1.4
Take maintainership.
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sat, 26 Dec 2020
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[ 23:01 glewis ]  
Restrict to Java 8, since this doesn't compile with Java 11
PR: 251774
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Tue, 26 Nov 2019
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[ 21:46 jkim ] (Only the first 10 of 443 ports in this commit are shown above. )
Clean up after java/openjdk6 and java/openjdk6-jre removal
java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663). Now this patch completely removes remaining stuff from the
ports tree.
PR: 241953 (exp-run)
Reviewed by: glewis
Approved by: portmgr (antoine)
Differential Revision: https://reviews.freebsd.org/D22342
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Mon, 20 Jan 2014
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[ 23:10 bapt ]
Support stage
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Fri, 20 Sep 2013
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[ 15:55 bapt ] (Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Mon, 10 Dec 2012
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[ 11:25 bapt ] (Only the first 10 of 60 ports in this commit are shown above. )
Decommissioning java 1.5 (EOLed since October 2009):
suppress any reference to USE_JAVA= 1.5+ (part1)
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Mon, 1 Oct 2012
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[ 14:45 tabthorpe ] (Only the first 10 of 47 ports in this commit are shown above. )
- Reassign to the heap at maintainer's request
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Thu, 21 Jul 2011
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[ 05:03 linimon ] (Only the first 10 of 269 ports in this commit are shown above. )
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.
Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .
PR: ports/158969
Submitted by: rene
Tested on: pointyhat-west -exp
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Fri, 6 Jun 2008
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[ 13:08 edwin ] (Only the first 10 of 13 ports in this commit are shown above. )
Bump portrevision due to upgrade of devel/gettext.
The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).
PR: ports/124340
Submitted by: edwin@
Approved by: portmgr (pav)
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Sat, 19 May 2007
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[ 20:32 flz ] (Only the first 10 of 7868 ports in this commit are shown above. )
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
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Mon, 13 Feb 2006
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[ 09:42 hq ]
Jalview is a multiple alignment editor written in Java. It is used widely in a
variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain
database) and is also available as a general purpose alignment editor.
WWW: http://www.jalview.org
PR: 93054
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
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Number of commits found: 21 |
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