| Port details on branch 2022Q2 |
- hyphy Hypothesis testing using Phylogenies
- 2.5.60 biology
 =0      2.5.58Version of this port present on the latest quarterly branch. - Maintainer: jrm@FreeBSD.org
- Port Added: 2018-05-11 00:05:33
- Last Update: 2024-04-14 21:14:19
- Commit Hash: ce15321
- License: MIT
- WWW:
- https://www.hyphy.org/
- Description:
- HyPhy is an open-source software package for the analysis of genetic sequences
using techniques in phylogenetics, molecular evolution, and machine learning. It
features a rich scripting language for limitless customization of
analyses. Additionally, HyPhy features support for parallel computing
environments via message passing interface, MPI and it can be compiled as a
shared library and called from other programming environments such as Python and
R.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/hyphy/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/hyphy
- pkg install hyphy
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: hyphy
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: aarch64 amd64 i386 powerpc powerpc64 powerpc64le
- distinfo:
- TIMESTAMP = 1713128763
SHA256 (veg-hyphy-2.5.60_GH0.tar.gz) = bc3a5062ee3cee47de16c394189fb8a5feed48f9a8c12302432d6faa7f2ac301
SIZE (veg-hyphy-2.5.60_GH0.tar.gz) = 5599910
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- Test dependencies:
-
- bash : shells/bash
- Library dependencies:
-
- libcurl.so : ftp/curl
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for hyphy-2.5.60:
AVX=off: Advanced vector extensions support
===> Use 'make config' to modify these settings
- Options name:
- biology_hyphy
- USES:
- cmake:insource,testing localbase:ldflags
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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