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non port: biology/htslib/pkg-plist

Number of commits found: 9

Saturday, 27 Jan 2024
12:37 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/htslib: Moved man to share/man

Approved by:    portmgr (blanket)
commit hash: 2eb9c98180f04a69241536e169b277747f1c46c6 commit hash: 2eb9c98180f04a69241536e169b277747f1c46c6 commit hash: 2eb9c98180f04a69241536e169b277747f1c46c6 commit hash: 2eb9c98180f04a69241536e169b277747f1c46c6 2eb9c98
Saturday, 20 Mar 2021
17:14 jwb search for other commits by this committer
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout
Original commitRevision:568874 
Thursday, 5 Nov 2020
20:30 jwb search for other commits by this committer
biology/htslib: Upgrade to 1.11.0

Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11

Reported by:    portscout
Original commitRevision:554155 
Monday, 3 Aug 2020
17:40 jwb search for other commits by this committer
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
Original commitRevision:544090 
Monday, 16 Jul 2018
18:11 yuri search for other commits by this committer
biology/htslib: Update 1.6 -> 1.8

Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW

PR:		228908
Approved by:	maintainer's timeout (cartwright@asu.edu; 35 days)
Original commitRevision:474752 
Wednesday, 25 Oct 2017
10:19 pizzamig search for other commits by this committer
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Original commitRevision:452840 
Friday, 25 Dec 2015
01:31 junovitch search for other commits by this committer
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Original commitRevision:404398 
Friday, 6 Mar 2015
12:45 robak search for other commits by this committer
biology/htslib: update 1.1 -> 1.2.1

PR:		198291
Submitted by:	Reed Cartwright <cartwright@asu.edu>
Original commitRevision:380596 
Sunday, 14 Dec 2014
22:35 pawel search for other commits by this committer
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.

WWW: http://www.htslib.org/

PR:		195591
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>
Original commitRevision:374729 

Number of commits found: 9