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non port: biology/htslib/Makefile
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Number of commits found: 23

Tue, 18 Apr 2023
[ 21:55 Robert Clausecker (fuz) search for other commits by this committer ]    commit hash:bba4910f8cf9cb77e587343c7fc81c5341ae52f9  commit hash:bba4910f8cf9cb77e587343c7fc81c5341ae52f9  commit hash:bba4910f8cf9cb77e587343c7fc81c5341ae52f9  bba4910 
biology/htslib: fix build on armv7

This project includes some SIMD-enhanced functions for ARM NEON.
Unfortunately the code uses a bunch of intrinsics only available on
aarch64.  Disable the use of NEON on armv6 and armv7 to fix the build
on these platforms.

See also:	https://github.com/samtools/htslib/issues/1603
Approved by:	portmgr (build fix blanket)
Fri, 24 Feb 2023
[ 23:23 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:5ce41514802cd442c01388c30a97e1fde16d836f  commit hash:5ce41514802cd442c01388c30a97e1fde16d836f  commit hash:5ce41514802cd442c01388c30a97e1fde16d836f  5ce4151 
biology/htslib: Update to 1.17

Numerous enhancements and fixes

Changes:    https://github.com/samtools/htslib/releases

Reported by:    portscout
Thu, 5 Jan 2023
[ 23:16 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:2d9e290314480b09d4eb7340a10730c71e10a6b2  commit hash:2d9e290314480b09d4eb7340a10730c71e10a6b2  commit hash:2d9e290314480b09d4eb7340a10730c71e10a6b2  2d9e290 
biology/htslib: Update to 1.16

Numerous minor enhancements and bug fixes

Changes: https://github.com/samtools/htslib/releases
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 20 Jul 2022
[ 14:20 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  37526bb  (Only the first 10 of 82 ports in this commit are shown above. View all ports for this commit)
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 26 Feb 2022
[ 15:04 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:b3b13f54dcecb24ecd50e63fbdfdd32711a1b34c  commit hash:b3b13f54dcecb24ecd50e63fbdfdd32711a1b34c  commit hash:b3b13f54dcecb24ecd50e63fbdfdd32711a1b34c  b3b13f5 
biology/htslib: Update to 1.15

A few minor bug fixes and enhancements
No API changes affecting existing dependents

Reported by:    portscout
Sat, 18 Dec 2021
[ 17:56 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:134a1c9046c43338aa898af4bb1ab257a5c0618b  commit hash:134a1c9046c43338aa898af4bb1ab257a5c0618b  commit hash:134a1c9046c43338aa898af4bb1ab257a5c0618b  134a1c9 
biology/htslib: Update to 1.14

Several minor enhancements and fixes

Changes: https://github.com/samtools/htslib/tags
Fri, 10 Sep 2021
[ 21:18 Bernhard Froehlich (decke) search for other commits by this committer ]    commit hash:8522c8336e1656c2058fb4052f10d945cf88f9f5  commit hash:8522c8336e1656c2058fb4052f10d945cf88f9f5  commit hash:8522c8336e1656c2058fb4052f10d945cf88f9f5  8522c83 
biology/htslib: Add CPE information

Approved by:	portmgr (blanket)
Mon, 12 Jul 2021
[ 13:16 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:5fa07128ec66ff71ca0348a324e2777eb00ee89a  commit hash:5fa07128ec66ff71ca0348a324e2777eb00ee89a  commit hash:5fa07128ec66ff71ca0348a324e2777eb00ee89a  5fa0712 
htslib: Update to 1.13

Numerous enhancements and bug fixes

Changes:        https://github.com/samtools/htslib/releases/tag/1.13
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 20 Mar 2021
[ 17:14 jwb search for other commits by this committer ] Original commit   Revision:568874 (Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout
Thu, 5 Nov 2020
[ 20:30 jwb search for other commits by this committer ] Original commit   Revision:554155
biology/htslib: Upgrade to 1.11.0

Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11

Reported by:    portscout
Mon, 3 Aug 2020
[ 17:40 jwb search for other commits by this committer ] Original commit   Revision:544090 (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
Thu, 2 Aug 2018
[ 19:27 fernape search for other commits by this committer ] Original commit   Revision:476245
biology/htslib: update to 1.9

PR:	230170
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16568
Mon, 16 Jul 2018
[ 18:11 yuri search for other commits by this committer ] Original commit   Revision:474752
biology/htslib: Update 1.6 -> 1.8

Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW

PR:		228908
Approved by:	maintainer's timeout (cartwright@asu.edu; 35 days)
Wed, 25 Oct 2017
[ 10:19 pizzamig search for other commits by this committer ] Original commit   Revision:452840 (Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Fri, 21 Oct 2016
[ 15:21 mat search for other commits by this committer ] Original commit   Revision:424427 (Only the first 10 of 354 ports in this commit are shown above. View all ports for this commit)
Use USES=pathfix where applicable.

PR:		213195
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D8093
Thu, 26 May 2016
[ 20:28 pi search for other commits by this committer ] Original commit   Revision:415914
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 1 Apr 2016
[ 13:29 mat search for other commits by this committer ] Original commit   Revision:412344 (Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 25 Dec 2015
[ 01:31 junovitch search for other commits by this committer ] Original commit   Revision:404398 (Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Wed, 6 May 2015
[ 15:16 mat search for other commits by this committer ] Original commit   Revision:385521 (Only the first 10 of 348 ports in this commit are shown above. View all ports for this commit)
Update ports in the [bcd]* categories to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 6 Mar 2015
[ 12:45 robak search for other commits by this committer ] Original commit   Revision:380596
biology/htslib: update 1.1 -> 1.2.1

PR:		198291
Submitted by:	Reed Cartwright <cartwright@asu.edu>
Sun, 14 Dec 2014
[ 22:35 pawel search for other commits by this committer ] Original commit   Revision:374729
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.

WWW: http://www.htslib.org/

PR:		195591
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>

Number of commits found: 23