| non port: biology/htslib/Makefile |
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SVNWeb
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Number of commits found: 23 |
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Tue, 18 Apr 2023
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[ 21:55 Robert Clausecker (fuz)  ]    bba4910
biology/htslib: fix build on armv7
This project includes some SIMD-enhanced functions for ARM NEON.
Unfortunately the code uses a bunch of intrinsics only available on
aarch64. Disable the use of NEON on armv6 and armv7 to fix the build
on these platforms.
See also: https://github.com/samtools/htslib/issues/1603
Approved by: portmgr (build fix blanket)
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Fri, 24 Feb 2023
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[ 23:23 Jason W. Bacon (jwb) ] 5ce4151
biology/htslib: Update to 1.17
Numerous enhancements and fixes
Changes: https://github.com/samtools/htslib/releases
Reported by: portscout
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Thu, 5 Jan 2023
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[ 23:16 Jason W. Bacon (jwb) ] 2d9e290
biology/htslib: Update to 1.16
Numerous minor enhancements and bug fixes
Changes: https://github.com/samtools/htslib/releases
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Sat, 26 Feb 2022
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[ 15:04 Jason W. Bacon (jwb) ] b3b13f5
biology/htslib: Update to 1.15
A few minor bug fixes and enhancements
No API changes affecting existing dependents
Reported by: portscout
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Sat, 18 Dec 2021
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[ 17:56 Jason W. Bacon (jwb) ] 134a1c9
biology/htslib: Update to 1.14
Several minor enhancements and fixes
Changes: https://github.com/samtools/htslib/tags
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Fri, 10 Sep 2021
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[ 21:18 Bernhard Froehlich (decke) ] 8522c83
biology/htslib: Add CPE information
Approved by: portmgr (blanket)
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Mon, 12 Jul 2021
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[ 13:16 Jason W. Bacon (jwb) ] 5fa0712
htslib: Update to 1.13
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/htslib/releases/tag/1.13
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sat, 20 Mar 2021
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[ 17:14 jwb ]   (Only the first 10 of 17 ports in this commit are shown above. )
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thu, 5 Nov 2020
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[ 20:30 jwb ]
biology/htslib: Upgrade to 1.11.0
Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 17:40 jwb ] (Only the first 10 of 12 ports in this commit are shown above. )
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Thu, 2 Aug 2018
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[ 19:27 fernape ]
biology/htslib: update to 1.9
PR: 230170
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16568
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Mon, 16 Jul 2018
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[ 18:11 yuri ]
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright@asu.edu; 35 days)
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ] (Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Fri, 21 Oct 2016
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[ 15:21 mat ] (Only the first 10 of 354 ports in this commit are shown above. )
Use USES=pathfix where applicable.
PR: 213195
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D8093
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Thu, 26 May 2016
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[ 20:28 pi ]
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 1 Apr 2016
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[ 13:29 mat ] (Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Fri, 25 Dec 2015
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[ 01:31 junovitch ] (Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Wed, 6 May 2015
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[ 15:16 mat ] (Only the first 10 of 348 ports in this commit are shown above. )
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight
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Fri, 6 Mar 2015
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[ 12:45 robak ]
biology/htslib: update 1.1 -> 1.2.1
PR: 198291
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Sun, 14 Dec 2014
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[ 22:35 pawel ]
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
PR: 195591
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found: 23 |
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