Port details on branch 2022Q2 |
- hisat2 Alignment program for mapping next-generation sequencing reads
- 2.2.1_2 biology =0 2.2.1_2Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2019-01-11 16:02:24
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: perl5 python
- License: GPLv3
- WWW:
- https://ccb.jhu.edu/software/hisat2/index.shtml
- Description:
- HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as to a single reference genome).
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/hisat2/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/hisat2
- pkg install hisat2
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: hisat2
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: aarch64 amd64 powerpc64 powerpc64le riscv64
- distinfo:
- TIMESTAMP = 1637941870
SHA256 (DaehwanKimLab-hisat2-v2.2.1_GH0.tar.gz) = f3f4f867d0a6b1f880d64efc19deaa5788c62050e0a4d614ce98b3492f702599
SIZE (DaehwanKimLab-hisat2-v2.2.1_GH0.tar.gz) = 6761242
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- simde>0 : devel/simde
- gmake>=4.3 : devel/gmake
- python3.9 : lang/python39
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- python3.9 : lang/python39
- perl5>=5.32.r0<5.33 : lang/perl5.32
- This port is required by:
- for Run
-
- biology/biostar-tools
- biology/rna-seq
Configuration Options:
- No options to configure
- Options name:
- biology_hisat2
- USES:
- gmake localbase perl5 python shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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