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non port: biology/hhsuite/Makefile
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Number of commits found: 23

Sun, 23 Apr 2023
[ 09:09 Gerald Pfeifer (gerald) search for other commits by this committer ]    commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  8d3e020  (Only the first 10 of 2091 ports in this commit are shown above. View all ports for this commit)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
Sat, 1 Oct 2022
[ 18:16 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:e7cb6b0a685d45e861be55d1925b9101e88a9e64  commit hash:e7cb6b0a685d45e861be55d1925b9101e88a9e64  commit hash:e7cb6b0a685d45e861be55d1925b9101e88a9e64  e7cb6b0 
biology/hhsuite: Disable on 32-bit architectures following upstream advice
[ 15:08 Yuri Victorovich (yuri) search for other commits by this committer Author: Robert Clausecker ]    commit hash:75d814716539317715472ded1bb11b3c6ccb72bc  commit hash:75d814716539317715472ded1bb11b3c6ccb72bc  commit hash:75d814716539317715472ded1bb11b3c6ccb72bc  75d8147 
biology/hhsuite: fix build on armv7

PR:		266736
Fri, 9 Sep 2022
[ 21:49 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:65b542d259ee8de09ae6802dd2e3ed811ea8fceb  commit hash:65b542d259ee8de09ae6802dd2e3ed811ea8fceb  commit hash:65b542d259ee8de09ae6802dd2e3ed811ea8fceb  65b542d 
biology/hhsuite: Broken on armv7

Reported by:	fallout
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Thu, 4 Aug 2022
[ 16:21 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:bd8b68e6415a3671c144baa10871ef3f19f26eab  commit hash:bd8b68e6415a3671c144baa10871ef3f19f26eab  commit hash:bd8b68e6415a3671c144baa10871ef3f19f26eab  bd8b68e 
biology/hhsuite: Revert commit "Broken on systems where OpenMP isn't enabled"

IT was added by mistake.
The failures on armv7 are due to -march=native.

This reverts commit 0f20e25bb0c89821c657ce7d8424f6e6ad1c9a45.

Reported by:	pkubaj@
[ 07:41 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:0f20e25bb0c89821c657ce7d8424f6e6ad1c9a45  commit hash:0f20e25bb0c89821c657ce7d8424f6e6ad1c9a45  commit hash:0f20e25bb0c89821c657ce7d8424f6e6ad1c9a45  0f20e25 
biology/hhsuite: Broken on systems where OpenMP isn't enabled

Reported by:	fallout
Wed, 27 Apr 2022
[ 13:22 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:e7af5e32b40796da3f0c252941d5f427f7519234  commit hash:e7af5e32b40796da3f0c252941d5f427f7519234  commit hash:e7af5e32b40796da3f0c252941d5f427f7519234  e7af5e3 
biology/hhsuite: check for omp.h on all architectures
Thu, 21 Apr 2022
[ 17:11 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:8a75ffbc9ffcdcf330104bfbbc95f5ad57fbf92a  commit hash:8a75ffbc9ffcdcf330104bfbbc95f5ad57fbf92a  commit hash:8a75ffbc9ffcdcf330104bfbbc95f5ad57fbf92a  8a75ffb 
biology/hhsuite: drop HAVE_POWER8 on powerpc64

powerpc64 uses PPC970 as a baseline.
Tue, 16 Nov 2021
[ 12:03 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:f00588c63480bbe584bbfa766e5ca86cff893cf4  commit hash:f00588c63480bbe584bbfa766e5ca86cff893cf4  commit hash:f00588c63480bbe584bbfa766e5ca86cff893cf4  f00588c 
biology/hhsuite: fix packaging on powerpc

pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhalign_omp:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhblits_ca3m:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhblits_omp:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhsearch_omp:No such
file or directory

powerpc doesn't have LLVM with libomp.
Mon, 13 Sep 2021
[ 15:47 Mikael Urankar (mikael) search for other commits by this committer ]    commit hash:e9f35d7e41d9f83d4212d4fe2d2e0410a3e90f66  commit hash:e9f35d7e41d9f83d4212d4fe2d2e0410a3e90f66  commit hash:e9f35d7e41d9f83d4212d4fe2d2e0410a3e90f66  e9f35d7 
biology/hhsuite: Fix build on aarch64

Approved by:	portmgr (build fix blanket)
Thu, 8 Jul 2021
[ 13:13 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:f1475a456c8257a759010ee0b949bde85ad6ad4f  commit hash:f1475a456c8257a759010ee0b949bde85ad6ad4f  commit hash:f1475a456c8257a759010ee0b949bde85ad6ad4f  f1475a4 
biology/hhsuite: fix build on powerpc64*

hhsuite now supports VSX.
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Thu, 27 Aug 2020
[ 04:28 yuri search for other commits by this committer ] Original commit   Revision:546314
biology/hhsuite: Update 3.2.0 -> 3.3.0

Reported by:	portscout
Mon, 11 May 2020
[ 19:33 pkubaj search for other commits by this committer ] Original commit   Revision:534934
biology/hhsuite: fix build on powerpc64 elfv2

Use GCC instead of Clang:
/usr/lib/clang/10.0.0/include/mmintrin.h:216:19: error: use of undeclared
identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
Sun, 19 Apr 2020
[ 09:49 danilo search for other commits by this committer ] Original commit   Revision:532095 (Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
- Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is
deprecated and will be removed)
- Fix science/gromacs plist when MPI option is enabled
- Bump PORTREVISION for all the consumers of net/openmpi
Sun, 8 Mar 2020
[ 21:56 jbeich search for other commits by this committer ] Original commit   Revision:528082 (Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020
Sat, 21 Sep 2019
[ 18:59 jbeich search for other commits by this committer ] Original commit   Revision:512535 (Only the first 10 of 58 ports in this commit are shown above. View all ports for this commit)
devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/
Mon, 5 Aug 2019
[ 14:23 pkubaj search for other commits by this committer ] Original commit   Revision:508177
biology/hhsuite: fix build on powerpc64

This port can't use Altivec. Instead, it's possible to use GCC's translation
layer from SSE. Adjust build flags to do it.

PR:		239645
Approved by:	yuri (maintainer), tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D21160
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Wed, 22 May 2019
[ 02:50 yuri search for other commits by this committer ] Original commit   Revision:502244
biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't exist
or isn't detected.

It forces it to default to SSE2 on amd64/i386 and relaxes the SIMD requirement
on all other platforms.

Reported by:	fallout
Sun, 19 May 2019
[ 06:52 yuri search for other commits by this committer ] Original commit   Revision:502015
New port: biology/hhsuite: Remote protein homology detection suite

Number of commits found: 23