| non port: biology/hhsuite/Makefile |
|
SVNWeb
|
Number of commits found: 23 |
|
Sun, 23 Apr 2023
|
[ 09:09 Gerald Pfeifer (gerald)  ]    8d3e020 (Only the first 10 of 2091 ports in this commit are shown above.  )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
|
Sat, 1 Oct 2022
|
[ 18:16 Yuri Victorovich (yuri) ] e7cb6b0
biology/hhsuite: Disable on 32-bit architectures following upstream advice
|
[ 15:08 Yuri Victorovich (yuri) Author: Robert Clausecker ] 75d8147
biology/hhsuite: fix build on armv7
PR: 266736
|
|
Fri, 9 Sep 2022
|
[ 21:49 Yuri Victorovich (yuri) ] 65b542d
biology/hhsuite: Broken on armv7
Reported by: fallout
|
|
Wed, 7 Sep 2022
|
[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
|
|
Thu, 4 Aug 2022
|
[ 16:21 Yuri Victorovich (yuri) ] bd8b68e
biology/hhsuite: Revert commit "Broken on systems where OpenMP isn't enabled"
IT was added by mistake.
The failures on armv7 are due to -march=native.
This reverts commit 0f20e25bb0c89821c657ce7d8424f6e6ad1c9a45.
Reported by: pkubaj@
|
[ 07:41 Yuri Victorovich (yuri) ] 0f20e25
biology/hhsuite: Broken on systems where OpenMP isn't enabled
Reported by: fallout
|
|
Wed, 27 Apr 2022
|
[ 13:22 Piotr Kubaj (pkubaj) ] e7af5e3
biology/hhsuite: check for omp.h on all architectures
|
|
Thu, 21 Apr 2022
|
[ 17:11 Piotr Kubaj (pkubaj) ] 8a75ffb
biology/hhsuite: drop HAVE_POWER8 on powerpc64
powerpc64 uses PPC970 as a baseline.
|
|
Tue, 16 Nov 2021
|
[ 12:03 Piotr Kubaj (pkubaj) ] f00588c
biology/hhsuite: fix packaging on powerpc
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhalign_omp:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhblits_ca3m:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhblits_omp:No such
file or directory
pkg-static: Unable to access file
/wrkdirs/usr/ports/biology/hhsuite/work/stage/usr/local/bin/hhsearch_omp:No such
file or directory
powerpc doesn't have LLVM with libomp.
|
|
Mon, 13 Sep 2021
|
[ 15:47 Mikael Urankar (mikael) ] e9f35d7
biology/hhsuite: Fix build on aarch64
Approved by: portmgr (build fix blanket)
|
|
Thu, 8 Jul 2021
|
[ 13:13 Piotr Kubaj (pkubaj) ] f1475a4
biology/hhsuite: fix build on powerpc64*
hhsuite now supports VSX.
|
|
Wed, 7 Apr 2021
|
[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
|
|
Tue, 6 Apr 2021
|
[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
|
|
Thu, 27 Aug 2020
|
[ 04:28 yuri ]  
biology/hhsuite: Update 3.2.0 -> 3.3.0
Reported by: portscout
|
|
Mon, 11 May 2020
|
[ 19:33 pkubaj ]
biology/hhsuite: fix build on powerpc64 elfv2
Use GCC instead of Clang:
/usr/lib/clang/10.0.0/include/mmintrin.h:216:19: error: use of undeclared
identifier '__builtin_ia32_punpckhbw'
return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
|
|
Sun, 19 Apr 2020
|
[ 09:49 danilo ] (Only the first 10 of 32 ports in this commit are shown above. )
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
- Remove option for net/openmpi2 from science/pnetcdf (net/openmpi2 is
deprecated and will be removed)
- Fix science/gromacs plist when MPI option is enabled
- Bump PORTREVISION for all the consumers of net/openmpi
|
|
Sun, 8 Mar 2020
|
[ 21:56 jbeich ] (Only the first 10 of 64 ports in this commit are shown above. )
Drop dependency on devel/openmp
- Drop if devel/llvm* was used as a substitute
Approved by: yuri, rene (earlier version)
Differential Revision: https://reviews.freebsd.org/D23020
|
|
Sat, 21 Sep 2019
|
[ 18:59 jbeich ] (Only the first 10 of 58 ports in this commit are shown above. )
devel/openmp: update to 9.0.0
- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783
Changes: http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI: https://abi-laboratory.pro/tracker/timeline/llvm_openmp/
|
|
Mon, 5 Aug 2019
|
[ 14:23 pkubaj ]
biology/hhsuite: fix build on powerpc64
This port can't use Altivec. Instead, it's possible to use GCC's translation
layer from SSE. Adjust build flags to do it.
PR: 239645
Approved by: yuri (maintainer), tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D21160
|
|
Fri, 26 Jul 2019
|
[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
|
|
Wed, 22 May 2019
|
[ 02:50 yuri ]
biology/hhsuite: Fix build on platforms where SIMD instruction set doesn't exist
or isn't detected.
It forces it to default to SSE2 on amd64/i386 and relaxes the SIMD requirement
on all other platforms.
Reported by: fallout
|
|
Sun, 19 May 2019
|
[ 06:52 yuri ]
New port: biology/hhsuite: Remote protein homology detection suite
|
Number of commits found: 23 |
As an Amazon Associate I earn from qualifying purchases.