| non port: biology/haplohseq/Makefile |
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SVNWeb
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Number of commits found: 18 |
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Wed, 27 Sep 2023
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[ 14:36 Dima Panov (fluffy)  ]    21d8008 (Only the first 10 of 176 ports in this commit are shown above.  )
devel/boost*: bump all consumers after 1.83.0
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Sun, 9 Jul 2023
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[ 16:37 Jason W. Bacon (jwb) ] 3df899b
biology/haplohseq: Fix build on FreeBSD 14
Add -std=c++14 to override clang 16 default
Reported by: pkg-fallout
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Tue, 27 Jun 2023
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[ 19:34 Rene Ladan (rene) ] 3d9a815 (Only the first 10 of 4481 ports in this commit are shown above. )
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>
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Thu, 27 Apr 2023
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[ 18:25 Dima Panov (fluffy) ] 3e45e8e (Only the first 10 of 184 ports in this commit are shown above. )
*/*: bump all direct Boost cunsumers
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Sun, 23 Apr 2023
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[ 09:09 Gerald Pfeifer (gerald) ] 8d3e020 (Only the first 10 of 2091 ports in this commit are shown above. )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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Mon, 16 Jan 2023
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[ 19:32 Dima Panov (fluffy) ] e1287d0 (Only the first 10 of 184 ports in this commit are shown above. )
*/*: bump libboost*.so libraries consumert after Boost upgrade
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Sun, 22 May 2022
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[ 20:17 Dima Panov (fluffy) ] b082b3d (Only the first 10 of 280 ports in this commit are shown above. )
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sat, 23 Jan 2021
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[ 19:31 jwb ]  
biology/haplohseq: Fix example scripts for python 3
Also clean up plist
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Fri, 15 Jan 2021
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[ 00:08 jwb ]
biology/haplohseq: Restrict to python3
Also remove extraneous @dir from plist
Reported by: rene
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Thu, 14 Jan 2021
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[ 15:51 jwb ]
biology/haplohseq: Resurrect and fix python2 dependency
Move upstream to Github fork
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Sun, 8 Mar 2020
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[ 17:01 antoine ] (Only the first 10 of 187 ports in this commit are shown above. )
Deprecate some ports using deprecated version of python
With hat: portmgr
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Wed, 11 Dec 2019
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[ 17:53 jbeich ] (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Sun, 17 Nov 2019
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[ 15:00 jwb ]
biology/haplohseq: Switch to distfile with example data
Add script to run on example input
Minor fix to report inadequate VCF input
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Mon, 16 Sep 2019
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[ 01:07 jwb ]
biology/haplohseq: Identify regions of allelic imbalance
Haplohseq identifies regions of allelic imbalance (AI) in sequencing data
obtained from impure samples where AI events exist in a potentially low
proportion of cells in the sample. Input to the software includes a VCF file
of genotypes and estimated phased genotypes.
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Number of commits found: 18 |
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