non port: biology/haplohseq/Makefile |
Number of commits found: 19 |
Tuesday, 13 Feb 2024
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14:44 Dima Panov (fluffy)
devel/boost: bump consumers after library update
db61653 |
Wednesday, 27 Sep 2023
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14:36 Dima Panov (fluffy)
devel/boost*: bump all consumers after 1.83.0
21d8008 |
Sunday, 9 Jul 2023
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16:37 Jason W. Bacon (jwb)
biology/haplohseq: Fix build on FreeBSD 14
Add -std=c++14 to override clang 16 default
Reported by: pkg-fallout
3df899b |
Tuesday, 27 Jun 2023
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19:34 Rene Ladan (rene)
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>
3d9a815 |
Thursday, 27 Apr 2023
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18:25 Dima Panov (fluffy)
*/*: bump all direct Boost cunsumers
3e45e8e |
Sunday, 23 Apr 2023
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09:09 Gerald Pfeifer (gerald)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020 |
Monday, 16 Jan 2023
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19:32 Dima Panov (fluffy)
*/*: bump libboost*.so libraries consumert after Boost upgrade
e1287d0 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Friday, 12 Aug 2022
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14:46 Dima Panov (fluffy)
*/*: bump all consumers after recent boost upgrade
4cf39de |
Sunday, 22 May 2022
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20:17 Dima Panov (fluffy)
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
b082b3d |
Wednesday, 7 Apr 2021
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08:09 Mathieu Arnold (mat)
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
cf118cc |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Saturday, 23 Jan 2021
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19:31 jwb
biology/haplohseq: Fix example scripts for python 3
Also clean up plist
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Friday, 15 Jan 2021
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00:08 jwb
biology/haplohseq: Restrict to python3
Also remove extraneous @dir from plist
Reported by: rene
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Thursday, 14 Jan 2021
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15:51 jwb
biology/haplohseq: Resurrect and fix python2 dependency
Move upstream to Github fork
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Sunday, 8 Mar 2020
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17:01 antoine
Deprecate some ports using deprecated version of python
With hat: portmgr
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Wednesday, 11 Dec 2019
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17:53 jbeich
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Sunday, 17 Nov 2019
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15:00 jwb
biology/haplohseq: Switch to distfile with example data
Add script to run on example input
Minor fix to report inadequate VCF input
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Monday, 16 Sep 2019
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01:07 jwb
biology/haplohseq: Identify regions of allelic imbalance
Haplohseq identifies regions of allelic imbalance (AI) in sequencing data
obtained from impure samples where AI events exist in a potentially low
proportion of cells in the sample. Input to the software includes a VCF file
of genotypes and estimated phased genotypes.
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Number of commits found: 19 |