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non port: biology/haplohseq/Makefile
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Number of commits found: 18

Wed, 27 Sep 2023
[ 14:36 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:21d8008e86830262f2a33a6dca9ddf2478cd6487  commit hash:21d8008e86830262f2a33a6dca9ddf2478cd6487  commit hash:21d8008e86830262f2a33a6dca9ddf2478cd6487  21d8008  (Only the first 10 of 176 ports in this commit are shown above. View all ports for this commit)
devel/boost*: bump all consumers after 1.83.0
Sun, 9 Jul 2023
[ 16:37 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:3df899be41477eac63133c5a618947719ae04f9e  commit hash:3df899be41477eac63133c5a618947719ae04f9e  commit hash:3df899be41477eac63133c5a618947719ae04f9e  3df899b 
biology/haplohseq: Fix build on FreeBSD 14

Add -std=c++14 to override clang 16 default

Reported by:    pkg-fallout
Tue, 27 Jun 2023
[ 19:34 Rene Ladan (rene) search for other commits by this committer ]    commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  commit hash:3d9a815d9c5acbb71f4bb07738bdeab4879feacb  3d9a815  (Only the first 10 of 4481 ports in this commit are shown above. View all ports for this commit)
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
Thu, 27 Apr 2023
[ 18:25 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:3e45e8e24481fab02384c55a1e655d1dc1b781c6  commit hash:3e45e8e24481fab02384c55a1e655d1dc1b781c6  commit hash:3e45e8e24481fab02384c55a1e655d1dc1b781c6  3e45e8e  (Only the first 10 of 184 ports in this commit are shown above. View all ports for this commit)
*/*: bump all direct Boost cunsumers
Sun, 23 Apr 2023
[ 09:09 Gerald Pfeifer (gerald) search for other commits by this committer ]    commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  commit hash:8d3e020ed032a8db00208994d0db646de7dc6f5b  8d3e020  (Only the first 10 of 2091 ports in this commit are shown above. View all ports for this commit)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
Mon, 16 Jan 2023
[ 19:32 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:e1287d0d1228d93e469256fa6c4c824b9d20426b  commit hash:e1287d0d1228d93e469256fa6c4c824b9d20426b  commit hash:e1287d0d1228d93e469256fa6c4c824b9d20426b  e1287d0  (Only the first 10 of 184 ports in this commit are shown above. View all ports for this commit)
*/*:	bump libboost*.so libraries consumert after Boost upgrade
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 12 Aug 2022
[ 14:46 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  commit hash:4cf39decb348615b9c8a28370d987a85d1b8a5ed  4cf39de  (Only the first 10 of 722 ports in this commit are shown above. View all ports for this commit)
*/*: bump all consumers after recent boost upgrade
Sun, 22 May 2022
[ 20:17 Dima Panov (fluffy) search for other commits by this committer ]    commit hash:b082b3d13e8c4872b73fb681eb99b261926ac9cd  commit hash:b082b3d13e8c4872b73fb681eb99b261926ac9cd  commit hash:b082b3d13e8c4872b73fb681eb99b261926ac9cd  b082b3d  (Only the first 10 of 280 ports in this commit are shown above. View all ports for this commit)
devel/boost-all: bump all library consumers after boost upgrade

PR:	246106
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 23 Jan 2021
[ 19:31 jwb search for other commits by this committer ] Original commit   Revision:562414
biology/haplohseq: Fix example scripts for python 3

Also clean up plist
Fri, 15 Jan 2021
[ 00:08 jwb search for other commits by this committer ] Original commit   Revision:561615
biology/haplohseq: Restrict to python3

Also remove extraneous @dir from plist

Reported by:    rene
Thu, 14 Jan 2021
[ 15:51 jwb search for other commits by this committer ] Original commit   Revision:561567
biology/haplohseq: Resurrect and fix python2 dependency

Move upstream to Github fork
Sun, 8 Mar 2020
[ 17:01 antoine search for other commits by this committer ] Original commit   Revision:528058 (Only the first 10 of 187 ports in this commit are shown above. View all ports for this commit)
Deprecate some ports using deprecated version of python

With hat:	portmgr
Wed, 11 Dec 2019
[ 17:53 jbeich search for other commits by this committer ] Original commit   Revision:519824 (Only the first 10 of 417 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Sun, 17 Nov 2019
[ 15:00 jwb search for other commits by this committer ] Original commit   Revision:517828
biology/haplohseq: Switch to distfile with example data

Add script to run on example input
Minor fix to report inadequate VCF input
Mon, 16 Sep 2019
[ 01:07 jwb search for other commits by this committer ] Original commit   Revision:512137
biology/haplohseq: Identify regions of allelic imbalance

Haplohseq identifies regions of allelic imbalance (AI) in sequencing data
obtained from impure samples where AI events exist in a potentially low
proportion of cells in the sample.  Input to the software includes a VCF file
of genotypes and estimated phased genotypes.

Number of commits found: 18