Port details on branch 2022Q2 |
- groopm Metagenomic binning suite
- 0.3.4_4 biology =0 0.3.4_4Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2018-12-07 00:10:56
- Last Update: 2023-06-27 19:34:34
- Commit Hash: 3d9a815
- Also Listed In: python
- License: GPLv3
- WWW:
- https://ecogenomics.github.io/GroopM/
- Description:
- GroopM is a metagenomic binning toolset. It leverages spatio-temoral
dynamics (differential coverage) to accurately (and almost automatically)
extract population genomes from multi-sample metagenomic datasets.
GroopM is largely parameter-free. Use: groopm -h for more info.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/groopm/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/groopm
- pkg install GroopM
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: GroopM
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1544140602
SHA256 (GroopM-0.3.4.tar.gz) = 48bdaeb9010e7d81785697a55edc394ef36c2646b310d625a24bec740f1b6080
SIZE (GroopM-0.3.4.tar.gz) = 127707
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- py39-numpy>=1.16,1<1.25,1 : math/py-numpy@py39
- py39-matplotlib>=1.1.0 : math/py-matplotlib@py39
- py39-scipy>=0.10.1 : science/py-scipy@py39
- py39-tables>=2.3 : devel/py-tables@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_groopm
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|