notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details
graphlan High-quality circular representations of taxonomic, phylogenetic trees
1.1.3_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.1.3_1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-02-03 20:13:43
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: MIT
WWW:
https://bitbucket.org/nsegata/graphlan/wiki/Home
Description:
GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (73 items)
Collapse this list.
  1. /usr/local/share/licenses/graphlan-1.1.3_1/catalog.mk
  2. /usr/local/share/licenses/graphlan-1.1.3_1/LICENSE
  3. /usr/local/share/licenses/graphlan-1.1.3_1/MIT
  4. bin/graphlan
  5. bin/graphlan_annotate
  6. share/graphlan/export2graphlan/.hg_archival.txt
  7. share/graphlan/export2graphlan/.hgsub
  8. share/graphlan/export2graphlan/.hgsubstate
  9. share/graphlan/export2graphlan/README.md
  10. share/graphlan/export2graphlan/export2graphlan.py
  11. share/graphlan/export2graphlan/license.txt
  12. share/graphlan/export2graphlan/todo-list.txt
  13. share/graphlan/graphlan.py
  14. share/graphlan/graphlan_annotate.py
  15. share/graphlan/pyphlan/.hg_archival.txt
  16. share/graphlan/pyphlan/__init__.py
  17. share/graphlan/pyphlan/bo6_screen.py
  18. share/graphlan/pyphlan/choco_postprocess_euks.py
  19. share/graphlan/pyphlan/choco_postprocess_viruses.py
  20. share/graphlan/pyphlan/choco_profile.py
  21. share/graphlan/pyphlan/choco_summary.py
  22. share/graphlan/pyphlan/conv_cg2cgs.py
  23. share/graphlan/pyphlan/conv_cg2mg.py
  24. share/graphlan/pyphlan/conv_ctxt2coretxt.py
  25. share/graphlan/pyphlan/conv_ctxt2mat.py
  26. share/graphlan/pyphlan/conv_ctxt2rxl.py
  27. share/graphlan/pyphlan/conv_ctxt2ttxt.py
  28. share/graphlan/pyphlan/conv_ctxt2txt.py
  29. share/graphlan/pyphlan/conv_fna2rxl.py
  30. share/graphlan/pyphlan/conv_t2g_2_g2t.py
  31. share/graphlan/pyphlan/conv_tid2tax.py
  32. share/graphlan/pyphlan/conv_txt2ls.py
  33. share/graphlan/pyphlan/conv_uc2txt.py
  34. share/graphlan/pyphlan/fna_exact_matches.py
  35. share/graphlan/pyphlan/fna_extract_from_bo6.py
  36. share/graphlan/pyphlan/fna_extract_from_primersearch.py
  37. share/graphlan/pyphlan/fna_extract_with_primers.py
  38. share/graphlan/pyphlan/fna_g2r.py
  39. share/graphlan/pyphlan/fna_len.py
  40. share/graphlan/pyphlan/fna_revcomp.py
  41. share/graphlan/pyphlan/fna_sss.py
  42. share/graphlan/pyphlan/fna_t2g.py
  43. share/graphlan/pyphlan/libsvm_cv.py
  44. share/graphlan/pyphlan/license.txt
  45. share/graphlan/pyphlan/merg_ctxt.py
  46. share/graphlan/pyphlan/mlst_table2fna.py
  47. share/graphlan/pyphlan/msg.py
  48. share/graphlan/pyphlan/pyphlan.py
  49. share/graphlan/pyphlan/tab.py
  50. share/graphlan/pyphlan/tab.pyc
  51. share/graphlan/pyphlan/tab_sel_cols.py
  52. share/graphlan/pyphlan/tab_sub.py
  53. share/graphlan/pyphlan/tree_cores.py
  54. share/graphlan/pyphlan/tree_get_leaves.py
  55. share/graphlan/pyphlan/tree_get_subtrees.py
  56. share/graphlan/pyphlan/tree_markers.py
  57. share/graphlan/pyphlan/tree_pairwisedists.py
  58. share/graphlan/pyphlan/tree_precision.py
  59. share/graphlan/pyphlan/tree_prune.py
  60. share/graphlan/pyphlan/tree_recall.py
  61. share/graphlan/pyphlan/tree_rename.py
  62. share/graphlan/pyphlan/tree_reroot.py
  63. share/graphlan/pyphlan/tree_select_markers.py
  64. share/graphlan/pyphlan/tree_subtree.py
  65. share/graphlan/pyphlan/util_argparse.py
  66. share/graphlan/pyphlan/utils.py
  67. share/graphlan/readme.txt
  68. share/graphlan/src/__init__.py
  69. share/graphlan/src/graphlan_lib.py
  70. share/graphlan/src/pyphlan.py
  71. @owner
  72. @group
  73. @mode
Collapse this list.
Dependency lines:
  • graphlan>0:biology/graphlan
To install the port:
cd /usr/ports/biology/graphlan/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/graphlan
  • pkg install graphlan
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: graphlan
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1549221812 SHA256 (graphlan-v1.1.3-66ec7cfce81e.tar.gz) = 8931bb166ea46b761d3e1694ff164b82585d5d5ba751ca9cb093bc2fe91c1cb0 SIZE (graphlan-v1.1.3-66ec7cfce81e.tar.gz) = 2608529

Expand this list (4 items)

Collapse this list.

SHA256 (pyphlan-eae40ebc0030.tar.gz) = 5f9d8e9d8ca5d6c458ba8ce7a7bb2e4a2e9944dc36c6b04850cdcfa4efa046c6 SIZE (pyphlan-eae40ebc0030.tar.gz) = 27139 SHA256 (export2graphlan-c168a100f37e.tar.gz) = 7f2738154a9c33c6ab902cc43f498b0bc9a0d038e96154ca0eadef29bc631c6b SIZE (export2graphlan-c168a100f37e.tar.gz) = 549743

Collapse this list.


Packages (timestamps in pop-ups are UTC):
graphlan
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.1.3_11.1.3_11.1.3_11.1.3_11.1.3_1-1.1.3_1-
FreeBSD:13:quarterly1.1.3_11.1.3_11.1.3_11.1.3_11.1.3_11.1.3_11.1.3_11.1.3_1
FreeBSD:14:latest1.1.3_11.1.3_11.1.3_11.1.3_11.1.3_11.1.3_1-1.1.3_1
FreeBSD:14:quarterly1.1.3_11.1.3_1-1.1.3_11.1.3_11.1.3_11.1.3_11.1.3_1
FreeBSD:15:latest1.1.3_11.1.3_1n/a1.1.3_1n/a1.1.3_11.1.3_11.1.3_1
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_graphlan
USES:
python shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://bitbucket.org/nsegata/graphlan/get/66ec7cfce81e.tar.gz?dummy=/
Collapse this list.

Number of commits found: 7

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.1.3_1
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.1.3_1
07 Apr 2021 08:09:01
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455ccommit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
1.1.3_1
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.1.3_1
14 Aug 2020 04:59:29
Revision:544867Original commit files touched by this commit
yuri search for other commits by this committer
biology/graphlan: Remove the 2.7 limitation on python because it's no longer
needed
1.1.3
23 Feb 2020 15:25:53
Revision:526925Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate a few ports

With hat:	portmgr
1.1.3
03 Feb 2019 20:13:26
Revision:492071Original commit files touched by this commit
yuri search for other commits by this committer
New port: biology/graphlan: High-quality circular representations of taxonomic,
phylogenetic trees

Number of commits found: 7