notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
All times are UTC
Ukraine
non port: biology/freebayes/Makefile

Number of commits found: 16

Sunday, 22 Jan 2023
16:42 Jason W. Bacon (jwb) search for other commits by this committer
biology/freebayes: Drop redundant tabixpp dep

tabixpp is included as a git submodule
commit hash: b0cafd4b1d5be5c256717eae0062ca28a50d5f79 commit hash: b0cafd4b1d5be5c256717eae0062ca28a50d5f79 commit hash: b0cafd4b1d5be5c256717eae0062ca28a50d5f79 commit hash: b0cafd4b1d5be5c256717eae0062ca28a50d5f79 b0cafd4
Friday, 6 Jan 2023
01:22 Jason W. Bacon (jwb) search for other commits by this committer
biology/freebayes: Bump PORTREVISION for biology/htslib update
commit hash: fea5f773c7b493dda2861fffa734fcf8e0612145 commit hash: fea5f773c7b493dda2861fffa734fcf8e0612145 commit hash: fea5f773c7b493dda2861fffa734fcf8e0612145 commit hash: fea5f773c7b493dda2861fffa734fcf8e0612145 fea5f77
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Sunday, 6 Feb 2022
20:23 Jason W. Bacon (jwb) search for other commits by this committer
biology/freebayes: Update to 1.3.6

Minor dependency updates, but mostly build system improvements
Changes:        https://github.com/freebayes/freebayes/tags

Reported by:    portscout
commit hash: 09167ae22b6631ec9a9d52fb66c3b177976d4c2c commit hash: 09167ae22b6631ec9a9d52fb66c3b177976d4c2c commit hash: 09167ae22b6631ec9a9d52fb66c3b177976d4c2c commit hash: 09167ae22b6631ec9a9d52fb66c3b177976d4c2c 09167ae
Friday, 17 Dec 2021
13:26 Piotr Kubaj (pkubaj) search for other commits by this committer
biology/freebayes: enable on riscv64
commit hash: b473e2091d12c0a210f4ad91580bb2b5ed779700 commit hash: b473e2091d12c0a210f4ad91580bb2b5ed779700 commit hash: b473e2091d12c0a210f4ad91580bb2b5ed779700 commit hash: b473e2091d12c0a210f4ad91580bb2b5ed779700 b473e20
Friday, 5 Nov 2021
01:14 Piotr Kubaj (pkubaj) search for other commits by this committer
biology/freebayes: builds fine on armv7
commit hash: 0e5026aa1ecfd8af00d8e881b3f3d0b013afb8e6 commit hash: 0e5026aa1ecfd8af00d8e881b3f3d0b013afb8e6 commit hash: 0e5026aa1ecfd8af00d8e881b3f3d0b013afb8e6 commit hash: 0e5026aa1ecfd8af00d8e881b3f3d0b013afb8e6 0e5026a
Wednesday, 3 Nov 2021
20:49 Jason W. Bacon (jwb) search for other commits by this committer
biology/freebayes: Update to 1.3.5

Fixes build on powerpc64 and aarch64, possibly others.

Changes:        https://github.com/freebayes/freebayes/tags

PR:             259627
Reported by:    pkubaj
commit hash: dc64b13129b889531be2dae60218484f9444cf92 commit hash: dc64b13129b889531be2dae60218484f9444cf92 commit hash: dc64b13129b889531be2dae60218484f9444cf92 commit hash: dc64b13129b889531be2dae60218484f9444cf92 dc64b13
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 2 Jan 2021
01:46 linimon search for other commits by this committer
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.

While here, pet portlint (Makevar order).

Approved by:	portmgr (tier-2 blanket)
Original commitRevision:559904 
Monday, 21 Sep 2020
18:14 se search for other commits by this committer
Fix build with -fno-common
Original commitRevision:549476 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Tuesday, 18 Sep 2018
09:28 linimon search for other commits by this committer
Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based
archs such as powerpc64.

Tested for no effect on amd64.

While here, pet portlint.

Approved by:	portgmr (tier-2 blanket)
Original commitRevision:480003 
Thursday, 21 Jun 2018
23:52 linimon search for other commits by this committer
Mark as broken on aarch64, and, where appropriate, armvX.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Original commitRevision:473009 
Friday, 20 Apr 2018
00:07 jwb search for other commits by this committer
biology/freebayes: Bayesian haplotype-based polymorphism discovery and
genotyping

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15116
Original commitRevision:467806 

Number of commits found: 16