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Port details
fluctuate Program to fit population models
1.40 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.40Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-08-06 11:45:39
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
License: not specified in port
WWW:
https://evolution.genetics.washington.edu/lamarc/fluctuate.html
Description:
Fluctuate fits the model which has a single population which has been growing (or shrinking) according to an exponential growth law. It estimates 4Nu and g, where N is the effective population size, u is the neutral mutation rate per site, and g is the growth rate of the population. Fluctuate forms part of the Lamarc (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) suite. See: http://evolution.genetics.washington.edu/lamarc.html
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (1 items)
Collapse this list.
  1. bin/fluctuate
Collapse this list.
Dependency lines:
  • fluctuate>0:biology/fluctuate
To install the port:
cd /usr/ports/biology/fluctuate/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fluctuate
  • pkg install fluctuate
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: fluctuate
Flavors: there is no flavor information for this port.
distinfo:
SHA256 (fluctuate1.4.src.doc.tar.gz) = 920ce06de2a02e18c149a803f9c5f32657948b88c0c97c5297371949f0cde109 SIZE (fluctuate1.4.src.doc.tar.gz) = 70690

Packages (timestamps in pop-ups are UTC):
fluctuate
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.401.401.401.401.40-1.40-
FreeBSD:13:quarterly1.401.401.401.401.401.401.401.40
FreeBSD:14:latest1.401.401.401.401.401.40-1.40
FreeBSD:14:quarterly1.401.40-1.401.401.401.401.40
FreeBSD:15:latest1.401.40n/a1.40n/a1.401.401.40
This port has no dependencies.
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for fluctuate-1.40: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings
Options name:
biology_fluctuate
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. http://evolution.gs.washington.edu/lamarc/fluctuate/
Collapse this list.

Number of commits found: 21

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.40
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.40
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.40
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.40
19 Nov 2015 00:51:15
Revision:401907Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Switch to options helpers
1.40
22 May 2015 13:34:22
Revision:387021Original commit files touched by this commit
mat search for other commits by this committer
Remove $FreeBSD$ from patches files in categories a-j.

With hat:	portmgr
Sponsored by:	Absolight
1.40
16 Feb 2014 11:35:01
Revision:344536Original commit files touched by this commit
ehaupt search for other commits by this committer
Support staging
1.40
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
1.40
19 Jun 2013 12:43:28
Revision:321244Original commit files touched by this commit
bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use PLIST_FILES and PORTDOCS;
. get rid of  pkg-plist;
. pet portlint: use one space after WWW: at pkg-descr;
. trim Makefile headers;
. remove the indefinite article from COMMENT.
1.40
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
1.40
21 Dec 2009 02:19:12
Original commit files touched by this commit
dougb search for other commits by this committer
For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
1.40
25 Jan 2007 11:01:25
Original commit files touched by this commit
vd search for other commits by this committer
Fix master site and un-deprecate
1.40
10 Dec 2006 12:37:38
Original commit files touched by this commit
gabor search for other commits by this committer
- Deprecate
- Set EXPIRATION_DATE

Approved by:    erwin (mentor)
1.40
24 Nov 2005 00:04:00
Original commit files touched by this commit
pav search for other commits by this committer
- Add SHA256
1.40
18 Feb 2005 13:41:09
Original commit files touched by this commit
krion search for other commits by this committer
Readd mistakenly removed patch to honour CC/CFLAGS.
1.40
18 Feb 2005 13:39:34
Original commit files touched by this commit
krion search for other commits by this committer
Update to version 1.40

PR:             ports/77675
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
1.30
20 Nov 2004 08:09:49
Original commit files touched by this commit
linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
1.30
31 Mar 2004 03:12:58
Original commit files touched by this commit
trevor search for other commits by this committer
SIZEify (maintainer timeout)
1.30
22 Oct 2003 09:29:55
Original commit files touched by this commit
osa search for other commits by this committer
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992
1.30
07 Mar 2003 05:56:43
Original commit files touched by this commit
ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
06 Aug 2001 15:45:39
commit hash: fp1.16897@dev.null.freshports.orgcommit hash: fp1.16897@dev.null.freshports.orgcommit hash: fp1.16897@dev.null.freshports.orgcommit hash: fp1.16897@dev.null.freshports.org files touched by this commit
wjv search for other commits by this committer
Add fluctuate 1.30, a program to fit population models.    

Number of commits found: 21