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Port details on branch 2022Q2
fastqc Quality control tool for high throughput sequence data
0.12.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.12.1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-11-30 22:54:38
Last Update: 2023-03-05 00:17:20
Commit Hash: a5b1448
Also Listed In: java perl5
License: GPLv3
WWW:
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Description:
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (254 items)
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  1. /usr/local/share/licenses/fastqc-0.12.1/catalog.mk
  2. /usr/local/share/licenses/fastqc-0.12.1/LICENSE
  3. /usr/local/share/licenses/fastqc-0.12.1/GPLv3
  4. bin/fastqc
  5. share/fastqc/Configuration/adapter_list.txt
  6. share/fastqc/Configuration/contaminant_list.txt
  7. share/fastqc/Configuration/limits.txt
  8. share/fastqc/Help/1 Introduction/.svn/entries
  9. share/fastqc/Help/1 Introduction/.svn/text-base/1.1 What is FastQC.html.svn-base
  10. share/fastqc/Help/1 Introduction/1.1 What is FastQC.html
  11. share/fastqc/Help/2 Basic Operations/.svn/entries
  12. share/fastqc/Help/2 Basic Operations/.svn/text-base/2.1 Opening a sequence file.html.svn-base
  13. share/fastqc/Help/2 Basic Operations/.svn/text-base/2.2 Evaluating Results.html.svn-base
  14. share/fastqc/Help/2 Basic Operations/.svn/text-base/2.3 Saving a Report.html.svn-base
  15. share/fastqc/Help/2 Basic Operations/2.1 Opening a sequence file.html
  16. share/fastqc/Help/2 Basic Operations/2.2 Evaluating Results.html
  17. share/fastqc/Help/2 Basic Operations/2.3 Saving a Report.html
  18. share/fastqc/Help/3 Analysis Modules/.svn/entries
  19. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/duplication_levels.png.svn-base
  20. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/kmer_profiles.png.svn-base
  21. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_gc_content.png.svn-base
  22. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_n_content.png.svn-base
  23. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_quality.png.svn-base
  24. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_base_sequence_content.png.svn-base
  25. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_gc_content.png.svn-base
  26. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_sequence_quality.png.svn-base
  27. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/per_tile_quality.png.svn-base
  28. share/fastqc/Help/3 Analysis Modules/.svn/prop-base/sequence_length_distribution.png.svn-base
  29. share/fastqc/Help/3 Analysis Modules/.svn/text-base/1 Basic Statistics.html.svn-base
  30. share/fastqc/Help/3 Analysis Modules/.svn/text-base/10 Adapter Content.html.svn-base
  31. share/fastqc/Help/3 Analysis Modules/.svn/text-base/11 Kmer Content.html.svn-base
  32. share/fastqc/Help/3 Analysis Modules/.svn/text-base/12 Per Tile Sequence Quality.html.svn-base
  33. share/fastqc/Help/3 Analysis Modules/.svn/text-base/2 Per Base Sequence Quality.html.svn-base
  34. share/fastqc/Help/3 Analysis Modules/.svn/text-base/3 Per Sequence Quality Scores.html.svn-base
  35. share/fastqc/Help/3 Analysis Modules/.svn/text-base/4 Per Base Sequence Content.html.svn-base
  36. share/fastqc/Help/3 Analysis Modules/.svn/text-base/5 Per Sequence GC Content.html.svn-base
  37. share/fastqc/Help/3 Analysis Modules/.svn/text-base/6 Per Base N Content.html.svn-base
  38. share/fastqc/Help/3 Analysis Modules/.svn/text-base/7 Sequence Length Distribution.html.svn-base
  39. share/fastqc/Help/3 Analysis Modules/.svn/text-base/8 Duplicate Sequences.html.svn-base
  40. share/fastqc/Help/3 Analysis Modules/.svn/text-base/9 Overrepresented Sequences.html.svn-base
  41. share/fastqc/Help/3 Analysis Modules/.svn/text-base/duplication_levels.png.svn-base
  42. share/fastqc/Help/3 Analysis Modules/.svn/text-base/kmer_profiles.png.svn-base
  43. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_gc_content.png.svn-base
  44. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_n_content.png.svn-base
  45. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_quality.png.svn-base
  46. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_base_sequence_content.png.svn-base
  47. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_gc_content.png.svn-base
  48. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_sequence_quality.png.svn-base
  49. share/fastqc/Help/3 Analysis Modules/.svn/text-base/per_tile_quality.png.svn-base
  50. share/fastqc/Help/3 Analysis Modules/.svn/text-base/sequence_length_distribution.png.svn-base
  51. share/fastqc/Help/3 Analysis Modules/1 Basic Statistics.html
  52. share/fastqc/Help/3 Analysis Modules/10 Adapter Content.html
  53. share/fastqc/Help/3 Analysis Modules/11 Kmer Content.html
  54. share/fastqc/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
  55. share/fastqc/Help/3 Analysis Modules/2 Per Base Sequence Quality.html
  56. share/fastqc/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html
  57. share/fastqc/Help/3 Analysis Modules/4 Per Base Sequence Content.html
  58. share/fastqc/Help/3 Analysis Modules/5 Per Sequence GC Content.html
  59. share/fastqc/Help/3 Analysis Modules/6 Per Base N Content.html
  60. share/fastqc/Help/3 Analysis Modules/7 Sequence Length Distribution.html
  61. share/fastqc/Help/3 Analysis Modules/8 Duplicate Sequences.html
  62. share/fastqc/Help/3 Analysis Modules/9 Overrepresented Sequences.html
  63. share/fastqc/Help/3 Analysis Modules/duplication_levels.png
  64. share/fastqc/Help/3 Analysis Modules/kmer_profiles.png
  65. share/fastqc/Help/3 Analysis Modules/per_base_gc_content.png
  66. share/fastqc/Help/3 Analysis Modules/per_base_n_content.png
  67. share/fastqc/Help/3 Analysis Modules/per_base_quality.png
  68. share/fastqc/Help/3 Analysis Modules/per_base_sequence_content.png
  69. share/fastqc/Help/3 Analysis Modules/per_sequence_gc_content.png
  70. share/fastqc/Help/3 Analysis Modules/per_sequence_quality.png
  71. share/fastqc/Help/3 Analysis Modules/per_tile_quality.png
  72. share/fastqc/Help/3 Analysis Modules/sequence_length_distribution.png
  73. share/fastqc/Templates/Icons/error.png
  74. share/fastqc/Templates/Icons/fastqc_icon.png
  75. share/fastqc/Templates/Icons/tick.png
  76. share/fastqc/Templates/Icons/warning.png
  77. share/fastqc/Templates/fastqc2fo.xsl
  78. share/fastqc/Templates/header_template.html
  79. share/java/classes/fastqc/cisd-jhdf5.jar
  80. share/java/classes/fastqc/htsjdk.jar
  81. share/java/classes/fastqc/jbzip2-0.9.jar
  82. share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$1.class
  83. share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class
  84. share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class
  85. share/java/classes/fastqc/net/sourceforge/iharder/base64/Base64.class
  86. share/java/classes/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class
  87. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class
  88. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class
  89. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class
  90. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class
  91. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class
  92. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class
  93. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class
  94. share/java/classes/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class
  95. share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class
  96. share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class
  97. share/java/classes/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class
  98. share/java/classes/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class
  99. share/java/classes/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class
  100. share/java/classes/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class
  101. share/java/classes/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class
  102. share/java/classes/fastqc/org/apache/commons/math3/distribution/FDistribution.class
  103. share/java/classes/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class
  104. share/java/classes/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class
  105. share/java/classes/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class
  106. share/java/classes/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class
  107. share/java/classes/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class
  108. share/java/classes/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class
  109. share/java/classes/fastqc/org/apache/commons/math3/distribution/RealDistribution.class
  110. share/java/classes/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class
  111. share/java/classes/fastqc/org/apache/commons/math3/distribution/TDistribution.class
  112. share/java/classes/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class
  113. share/java/classes/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class
  114. share/java/classes/fastqc/org/apache/commons/math3/exception/ConvergenceException.class
  115. share/java/classes/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class
  116. share/java/classes/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class
  117. share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class
  118. share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class
  119. share/java/classes/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class
  120. share/java/classes/fastqc/org/apache/commons/math3/exception/MathInternalError.class
  121. share/java/classes/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class
  122. share/java/classes/fastqc/org/apache/commons/math3/exception/NoBracketingException.class
  123. share/java/classes/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class
  124. share/java/classes/fastqc/org/apache/commons/math3/exception/NotPositiveException.class
  125. share/java/classes/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class
  126. share/java/classes/fastqc/org/apache/commons/math3/exception/NullArgumentException.class
  127. share/java/classes/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class
  128. share/java/classes/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class
  129. share/java/classes/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class
  130. share/java/classes/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class
  131. share/java/classes/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class
  132. share/java/classes/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class
  133. share/java/classes/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class
  134. share/java/classes/fastqc/org/apache/commons/math3/exception/util/Localizable.class
  135. share/java/classes/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class
  136. share/java/classes/fastqc/org/apache/commons/math3/random/AbstractWell.class
  137. share/java/classes/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class
  138. share/java/classes/fastqc/org/apache/commons/math3/random/RandomData.class
  139. share/java/classes/fastqc/org/apache/commons/math3/random/RandomDataImpl.class
  140. share/java/classes/fastqc/org/apache/commons/math3/random/RandomGenerator.class
  141. share/java/classes/fastqc/org/apache/commons/math3/random/Well19937c.class
  142. share/java/classes/fastqc/org/apache/commons/math3/special/Beta$1.class
  143. share/java/classes/fastqc/org/apache/commons/math3/special/Beta.class
  144. share/java/classes/fastqc/org/apache/commons/math3/special/Erf.class
  145. share/java/classes/fastqc/org/apache/commons/math3/special/Gamma$1.class
  146. share/java/classes/fastqc/org/apache/commons/math3/special/Gamma.class
  147. share/java/classes/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class
  148. share/java/classes/fastqc/org/apache/commons/math3/util/ContinuedFraction.class
  149. share/java/classes/fastqc/org/apache/commons/math3/util/DoubleArray.class
  150. share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class
  151. share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class
  152. share/java/classes/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class
  153. share/java/classes/fastqc/org/apache/commons/math3/util/FastMath.class
  154. share/java/classes/fastqc/org/apache/commons/math3/util/FastMathCalc.class
  155. share/java/classes/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class
  156. share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor$1.class
  157. share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class
  158. share/java/classes/fastqc/org/apache/commons/math3/util/Incrementor.class
  159. share/java/classes/fastqc/org/apache/commons/math3/util/MathUtils.class
  160. share/java/classes/fastqc/org/apache/commons/math3/util/Precision.class
  161. share/java/classes/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class
  162. share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class
  163. share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class
  164. share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class
  165. share/java/classes/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class
  166. share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class
  167. share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class
  168. share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class
  169. share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class
  170. share/java/classes/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class
  171. share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class
  172. share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class
  173. share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class
  174. share/java/classes/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class
  175. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class
  176. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class
  177. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class
  178. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class
  179. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class
  180. share/java/classes/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class
  181. share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class
  182. share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class
  183. share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class
  184. share/java/classes/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class
  185. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class
  186. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class
  187. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class
  188. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class
  189. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class
  190. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class
  191. share/java/classes/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class
  192. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class
  193. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class
  194. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class
  195. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class
  196. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class
  197. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class
  198. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class
  199. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class
  200. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class
  201. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class
  202. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class
  203. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class
  204. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class
  205. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class
  206. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class
  207. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class
  208. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class
  209. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class
  210. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class
  211. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class
  212. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class
  213. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class
  214. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class
  215. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class
  216. share/java/classes/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class
  217. share/java/classes/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class
  218. share/java/classes/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt
  219. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/error.png
  220. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png
  221. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg
  222. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png
  223. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/tick.png
  224. share/java/classes/fastqc/uk/ac/babraham/FastQC/Resources/warning.png
  225. share/java/classes/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class
  226. share/java/classes/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class
  227. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class
  228. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class
  229. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class
  230. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class
  231. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class
  232. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class
  233. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class
  234. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class
  235. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class
  236. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class
  237. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class
  238. share/java/classes/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class
  239. share/java/classes/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class
  240. share/java/classes/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class
  241. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class
  242. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class
  243. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGGenerator$SVGGraphics.class
  244. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGGenerator.class
  245. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGImageSaver.class
  246. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class
  247. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class
  248. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class
  249. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class
  250. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class
  251. share/java/classes/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class
  252. @owner
  253. @group
  254. @mode
Collapse this list.
Dependency lines:
  • fastqc>0:biology/fastqc
To install the port:
cd /usr/ports/biology/fastqc/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fastqc
  • pkg install fastqc
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: fastqc
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1677972229 SHA256 (fastqc_v0.12.1.zip) = 5f4dba8780231a25a6b8e11ab2c238601920c9704caa5458d9de559575d58aa7 SIZE (fastqc_v0.12.1.zip) = 11709692
Packages (timestamps in pop-ups are UTC):
fastqc
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.12.10.12.1-0.12.10.12.1---
FreeBSD:13:quarterly0.12.10.12.10.12.10.12.10.12.1-0.12.10.12.1
FreeBSD:14:latest0.12.10.12.10.11.9-0.12.1--0.12.1
FreeBSD:14:quarterly0.12.10.12.1--0.12.1-0.12.10.12.1
FreeBSD:15:latest0.12.10.12.1n/a-n/a-0.12.10.12.1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. java : java/openjdk8
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Run
  1. biology/atac-seq
  2. biology/biostar-tools
  3. biology/chip-seq
  4. biology/p5-TrimGalore
  5. biology/rna-seq
Configuration Options:
No options to configure
Options name:
biology_fastqc
USES:
zip perl5 shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Collapse this list.

There are no commits on branch 2022Q2 for this port
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