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non port: biology/fasta3/Makefile

Number of commits found: 41

Wednesday, 10 Jan 2024
08:16 Baptiste Daroussin (bapt) search for other commits by this committer
MAN?PREFIX: eleminate its usage  and move man to share/man
commit hash: 1b819e486953bae191a4b8f0da175b55cb6c3070 commit hash: 1b819e486953bae191a4b8f0da175b55cb6c3070 commit hash: 1b819e486953bae191a4b8f0da175b55cb6c3070 commit hash: 1b819e486953bae191a4b8f0da175b55cb6c3070 1b819e4
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Thursday, 6 May 2021
11:47 Mathieu Arnold (mat) search for other commits by this committer
Deorbit RESTRICTED && NO_CDROM, part one.

For ports that already use the licenses framwork, merge the content of
RESTRICTED/NO_CDROM/LEGAL* entries into LICENSEs.

Approved by:	rene
Differential Revision:	https://reviews.freebsd.org/D30010
commit hash: adb93122cbf753a26a0497479dbb88cf415de29b commit hash: adb93122cbf753a26a0497479dbb88cf415de29b commit hash: adb93122cbf753a26a0497479dbb88cf415de29b commit hash: adb93122cbf753a26a0497479dbb88cf415de29b adb9312
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Friday, 16 Oct 2015
13:31 danilo search for other commits by this committer
- Update to 36.3.8
- Pass maintainership to submitter

PR:		203817
Submitted by:	Wendell Borges <wendell@bsd.com.br>
Original commitRevision:399468 
Thursday, 7 May 2015
02:33 wen search for other commits by this committer
- Update to 36.3.7a
Original commitRevision:385592 
Sunday, 2 Mar 2014
10:58 marino search for other commits by this committer
biology/fasta3: Checked new distfile and regenerated distinfo to unbreak

Fasta3 distfile was significantly changed.  This should have been released
as a new version (e.g. 36.3.6e), so it's not clear why the distfile was
rerolled.  There are significant changes to makefiles, conf files and even
a few .c and .h files.  They all look like legitimate updates to me
though.

Set DIST_SUBDIR since this port is now known for rerolling, then
regenerate distinfo.  Also add Fasta license and bump revision.
Original commitRevision:346755 
Friday, 3 Jan 2014
19:46 bapt search for other commits by this committer
Mark as broken: Invalid checksum, seems like the software was rerolled
Original commitRevision:338577 
Tuesday, 29 Oct 2013
19:32 pawel search for other commits by this committer
Update to version 36.3.6d

PR:		ports/181883
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Original commitRevision:331982 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Friday, 19 Jul 2013
14:08 wen search for other commits by this committer
- Update to 36.3.6
- Drop maintainership
Original commitRevision:323293 
Monday, 1 Oct 2012
14:55 wen search for other commits by this committer
- Take maintainership
Original commitRevision:305131 
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Wednesday, 26 Jan 2011
20:26 beat search for other commits by this committer
- Update to 36.3.2 to fix distfile fetching on pointyhat

PR:             ports/154267
Submitted by:   Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer)
Feature safe:   yes
Original commit
Sunday, 23 Aug 2009
15:47 makc search for other commits by this committer
Update to 35.4.9

PR:             ports/137991
Submitted by:   Fernan Aguero (maintainer)
Original commit
Tuesday, 9 Jun 2009
07:53 itetcu search for other commits by this committer
- Update to 35.4.7 [1]
- Obey PREFIX [2]

Submitted by:   maintainer [1] [2]
Reported by:    QATty [2]
Original commit
Monday, 23 Feb 2009
16:12 amdmi3 search for other commits by this committer
- Update to 35.4.4

PR:             132007
Submitted by:   Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
(maintainer)
Original commit
Thursday, 10 Apr 2008
08:09 clsung search for other commits by this committer
- Update to 35.3.6

PR:             ports/122607
Submitted by:   maintainer (Fernan Aguero)
Original commit
Sunday, 30 Mar 2008
05:07 rafan search for other commits by this committer
- Update to 35.3.5
- Switch to .tar.gz distfile so that we don't define our do-extract
- While I'm here, using substitution for version numbers in pkg-plist
  for easier upgrade

PR:             ports/121690
Submitted by:   Wen heping <wenheping at gmail.com>
Approved by:    maintainer timeout (2 weeks)
Original commit
Friday, 9 Mar 2007
11:26 miwi search for other commits by this committer
- Update to 34.26.2

PR:             110079
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Tuesday, 31 Oct 2006
09:02 miwi search for other commits by this committer
- Update to 34.t26.b3

PR:             ports/104508
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 9 Jun 2006
19:18 pav search for other commits by this committer
- Update to 34.t25.d9

PR:             ports/98761
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Monday, 5 Jun 2006
21:18 erwin search for other commits by this committer
- Update to 34.t25.d8 [1]
- While I'm here, pet portlint [2]

PR:             98398 [1]
Submitted by:   miwi [1], self [2]
Approved by:    maintainer [1]
Original commit
Wednesday, 24 May 2006
16:55 sem search for other commits by this committer
- update to 34.t25.d7
- add MASTER_SITE_LOCAL as a second master site

PR:             ports/97310
Submitted by:   maintainer
Original commit
Sunday, 21 May 2006
21:32 kris search for other commits by this committer
BROKEN: Unfetchable
Original commit
Sunday, 7 May 2006
16:52 sem search for other commits by this committer
- Update to 34.t25.d6

PR:             ports/96063
Submitted by:   maintainer
Original commit
Monday, 20 Mar 2006
22:23 pav search for other commits by this committer
- Update to 34.t25.d5

PR:             ports/94741
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 10 Feb 2006
09:37 lawrance search for other commits by this committer
Update to 34.t25.d4.

PR:             ports/93052
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Thursday, 1 Jul 2004
03:02 linimon search for other commits by this committer
Chase mastersite and fix checksum to unbreak.  (Changes are inclusion of a
logfile, one Linux-only change, and one change in a test script).  Assign
submitter as new maintainer as current one has not responded to PRs for
some time.

PR:             ports/68199
Submitted by:   Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
Original commit
Monday, 21 Jun 2004
21:27 kris search for other commits by this committer
Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDEN
ports.  They will be removed on or after that date if they are still
broken and no fix has been submitted to GNATS.
Original commit
Saturday, 21 Feb 2004
19:31 kris search for other commits by this committer
BROKEN: Checksum mismatch
Original commit
Saturday, 15 Nov 2003
20:13 marcus search for other commits by this committer
unPERLify by using REINPLACE_CMD and SED where appropriate.

PR:             47654
Submitted by:   Simon 'portlint' Schubert <corecode@corecode.ath.cx>
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Tuesday, 3 Jul 2001
10:08 wjv search for other commits by this committer
Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.    
Original commit
Wednesday, 27 Jun 2001
11:15 wjv search for other commits by this committer
Updating my email address in my remaining ports.    
Original commit
Monday, 7 May 2001
13:16 jeh search for other commits by this committer
Updata biology/fasta3 to version 33.t08.d4    
Original commit
Thursday, 22 Mar 2001
09:04 sobomax search for other commits by this committer
Update to 33.t08.d3.    
Original commit
Monday, 12 Mar 2001
10:24 nbm search for other commits by this committer
- A small bugfix lead to a rerelease without a version number change.   - Bumped
PORTREVISION.    
Original commit
Thursday, 8 Mar 2001
14:39 sf search for other commits by this committer
update to 33.t08.d2.    
Original commit
Sunday, 11 Feb 2001
16:29 jeh search for other commits by this committer
- New port: biology/fasta3, which comprises the FASTA3 suite of DNA and    
protein sequence search programs   - FASTA3 updates only some of the elements of
FASTA2, which is why I have     submitted ports of both versions (as
biology/fasta and biology/fasta3)    
Original commit

Number of commits found: 41