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non port: biology/fasta/Makefile

Number of commits found: 25

Tuesday, 9 Jan 2024
15:41 Baptiste Daroussin (bapt) search for other commits by this committer
MAN[1-5]PREFIX: eleminate its usage  and move man to share/man
commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d e10e202
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Monday, 10 Jan 2022
15:15 Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).

A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.

These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,

Approved by:	portmgr (implicit)
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 bcaf25a
Thursday, 6 May 2021
11:47 Mathieu Arnold (mat) search for other commits by this committer
Deorbit RESTRICTED && NO_CDROM, part two.

Move ports to the licenses framework.

RESTRICTED → auto-accept (unless expressly stated otherwise)
NO_CDROM → dist-mirror pkg-mirror auto-accept

Differential Revision:  https://reviews.freebsd.org/D30010
commit hash: 3505159e72da2d8313ce2a8ddc527de700b5bc37 commit hash: 3505159e72da2d8313ce2a8ddc527de700b5bc37 commit hash: 3505159e72da2d8313ce2a8ddc527de700b5bc37 commit hash: 3505159e72da2d8313ce2a8ddc527de700b5bc37 3505159
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Friday, 21 Oct 2016
12:51 mat search for other commits by this committer
${RM} already has -f.

PR:		213570
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Original commitRevision:424411 
Wednesday, 2 Sep 2015
10:35 danfe search for other commits by this committer
- Do not falsely advertise that PowerPC build runs out of space and fails
- Remove redundant PKGMESSAGE assignment and sanitize symlinks while here
Original commitRevision:395829 
Monday, 24 Mar 2014
09:01 pawel search for other commits by this committer
- Add staging support
- Switch to PORTDOCS
Original commitRevision:348924 
Wednesday, 15 Jan 2014
22:50 bapt search for other commits by this committer
Reduce over inclusion of bsd.port.mk
Original commitRevision:339843 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Sunday, 30 Jun 2013
20:53 antoine search for other commits by this committer
Fix some PORT_OPTIONS conversions
Original commitRevision:322100 
Wednesday, 19 Jun 2013
18:51 bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. use f instead of file for a variable (portlint warns against file);
. do not mute install commands;
. remove article from COMMENT;
. trim Makefile headers;
. pet portlint: use one space after WWW: at pkg-descr.
Original commitRevision:321306 
Thursday, 1 Apr 2010
05:16 linimon search for other commits by this committer
Mark various ports as broken or ignore on powerpc.

While here, remove remnants of alpha.
Original commit
Wednesday, 18 Nov 2009
05:33 wen search for other commits by this committer
- Update to 21.1.1
Original commit
Saturday, 31 Jan 2009
22:45 pav search for other commits by this committer
- Update download location
Original commit
Friday, 18 Apr 2008
15:36 jmelo search for other commits by this committer
- Update mastersite.

PR:             ports/122130
Submitted by:   Ganael Laplanche <ganael.laplanche@martymac.com>
Original commit
Sunday, 7 May 2006
13:04 lawrance search for other commits by this committer
Update to 21.u1.d1 (fixes fetch).

Reported by:    fenner's distfile survey
Original commit
Saturday, 1 Apr 2006
12:34 edwin search for other commits by this committer
Use SUB_FILES for pkg-message
Original commit
Saturday, 20 Nov 2004
08:09 linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Original commit
Thursday, 1 Jul 2004
06:24 linimon search for other commits by this committer
Update to fix fetch.  Rework PORTVERSION to be more like biology/fasta3
and pacify portlint.

PR:             ports/67428
Submitted by:   Roman Neuhauser <neuhauser at chello dot cz>
Approved by:    maintainer timeout (one month)
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Tuesday, 3 Jul 2001
10:07 wjv search for other commits by this committer
Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.    
Original commit
Wednesday, 27 Jun 2001
11:15 wjv search for other commits by this committer
Updating my email address in my remaining ports.    
Original commit
Sunday, 11 Feb 2001
16:24 jeh search for other commits by this committer
New port: biology/fasta, the FASTA2 suite of DNA and protein sequence   search
tools    
Original commit

Number of commits found: 25