| Port details |
- dsr-pdb Simple C++ PDB reader (reads the protein description format)
- 1.0.3_12 biology
 =0      1.0.3_11Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2019-01-29 07:57:18
- Last Update: 2024-02-13 14:44:22
- Commit Hash: db61653
- License: LGPL21
- WWW:
- https://graphics.stanford.edu/~drussel/pdb/
- Description:
- dsr-pdb is a simple C++ PDB reader along with a couple of programs which use it
to manipulate pdb files (applying a rigid transform or splitting/merging). The
are aimed at people interested in proteins from a geometric viewpoint as they
allow easy access to the geometry and bond structure in addition of the
biological information. The reader has two modes for reading/writing a pdb file.
The simplest one, through the Protein class just reads and writes a single
protein from/to a pdb file (which must have only one chain, but can have
multiple models). The second, through the PDB class can handle pdb files with
multiple models and herogens (although these are just passed through and not
currently interpreted).
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- dsr-pdb>0:biology/dsr-pdb
- To install the port:
- cd /usr/ports/biology/dsr-pdb/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/dsr-pdb
- pkg install dsr-pdb
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: dsr-pdb
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1548747311
SHA256 (dsr-pdb-1.0.3/dsr-pdb.tgz) = e9fea9c4b8fc0255ee0e2bca11ab267d10cc9687cf5ba515c704875bcee21837
SIZE (dsr-pdb-1.0.3/dsr-pdb.tgz) = 958360
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- Library dependencies:
-
- libboost_program_options.so : devel/boost-libs
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_dsr-pdb
- USES:
- compiler:c++11-lang gmake libtool localbase:ldflags tar:tgz
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
1.0.3_12
13 Feb 2024 14:44:22
 |
Dima Panov (fluffy) |
devel/boost: bump consumers after library update |
1.0.3_11
27 Sep 2023 14:36:30
|
Dima Panov (fluffy) |
devel/boost*: bump all consumers after 1.83.0 |
1.0.3_10
27 Apr 2023 18:25:55
|
Dima Panov (fluffy) |
*/*: bump all direct Boost cunsumers |
1.0.3_9
16 Jan 2023 19:32:07
|
Dima Panov (fluffy) |
*/*: bump libboost*.so libraries consumert after Boost upgrade |
07 Sep 2022 21:58:51
|
Stefan Eßer (se) |
Remove WWW entries moved into port Makefiles
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner) |
1.0.3_8
07 Sep 2022 21:10:59
|
Stefan Eßer (se) |
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above  ) |
1.0.3_8
12 Aug 2022 14:46:53
|
Dima Panov (fluffy) |
*/*: bump all consumers after recent boost upgrade |
1.0.3_7
22 May 2022 20:17:16
|
Dima Panov (fluffy) |
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106 |
1.0.3_6
22 Mar 2022 00:07:11
|
Yuri Victorovich (yuri) |
biology/dsr-pdb: Remove -pg (mcount instrumentation) flag
This causes failure on aarch64:
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=262709 |
1.0.3_5
21 Mar 2022 19:25:25
|
Yuri Victorovich (yuri) |
biology/dsr-pdb: Broken on aarch64
Reported by: fallout |
1.0.3_5
07 Apr 2021 08:09:01
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
1.0.3_5
06 Apr 2021 14:31:07
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
1.0.3_5
11 Dec 2019 17:53:49
 |
jbeich |
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136 |
1.0.3_4
19 Aug 2019 15:35:28
|
jbeich |
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774 |
1.0.3_3
26 Jul 2019 20:46:57
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
1.0.3_2
12 Apr 2019 06:36:31
|
jbeich |
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303 |
1.0.3_1
05 Feb 2019 19:02:00
|
yuri |
biology/dsr-pdb: Correct typo |
1.0.3
05 Feb 2019 19:00:37
|
yuri |
biology/dsr-pdb: Add c++11 flags because boost isn't found without it
Also add patches for missing includes that only gcc complains about.
PR: 235519
Reported by: Piotr Kubaj <pkubaj@anongoth.pl> |
1.0.3
29 Jan 2019 07:56:30
|
yuri |
New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein description
format) |
As an Amazon Associate I earn from qualifying purchases.