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non port: biology/cufflinks/Makefile

Number of commits found: 19

Tuesday, 13 Feb 2024
14:44 Dima Panov (fluffy) search for other commits by this committer
devel/boost: bump consumers after library update
commit hash: db616534ff99d6268997e2f30858891e20641a1e commit hash: db616534ff99d6268997e2f30858891e20641a1e commit hash: db616534ff99d6268997e2f30858891e20641a1e commit hash: db616534ff99d6268997e2f30858891e20641a1e db61653
Wednesday, 27 Sep 2023
14:36 Dima Panov (fluffy) search for other commits by this committer
devel/boost*: bump all consumers after 1.83.0
commit hash: 21d8008e86830262f2a33a6dca9ddf2478cd6487 commit hash: 21d8008e86830262f2a33a6dca9ddf2478cd6487 commit hash: 21d8008e86830262f2a33a6dca9ddf2478cd6487 commit hash: 21d8008e86830262f2a33a6dca9ddf2478cd6487 21d8008
Thursday, 27 Apr 2023
18:25 Dima Panov (fluffy) search for other commits by this committer
*/*: bump all direct Boost cunsumers
commit hash: 3e45e8e24481fab02384c55a1e655d1dc1b781c6 commit hash: 3e45e8e24481fab02384c55a1e655d1dc1b781c6 commit hash: 3e45e8e24481fab02384c55a1e655d1dc1b781c6 commit hash: 3e45e8e24481fab02384c55a1e655d1dc1b781c6 3e45e8e
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Monday, 16 Jan 2023
19:32 Dima Panov (fluffy) search for other commits by this committer
*/*:	bump libboost*.so libraries consumert after Boost upgrade
commit hash: e1287d0d1228d93e469256fa6c4c824b9d20426b commit hash: e1287d0d1228d93e469256fa6c4c824b9d20426b commit hash: e1287d0d1228d93e469256fa6c4c824b9d20426b commit hash: e1287d0d1228d93e469256fa6c4c824b9d20426b e1287d0
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Friday, 12 Aug 2022
14:46 Dima Panov (fluffy) search for other commits by this committer
*/*: bump all consumers after recent boost upgrade
commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed commit hash: 4cf39decb348615b9c8a28370d987a85d1b8a5ed 4cf39de
Thursday, 28 Jul 2022
03:43 Yuri Victorovich (yuri) search for other commits by this committer
biology/cufflinks: Unbreak
commit hash: 8fd55d46d939263df2c327093c6bb21d74a29c0d commit hash: 8fd55d46d939263df2c327093c6bb21d74a29c0d commit hash: 8fd55d46d939263df2c327093c6bb21d74a29c0d commit hash: 8fd55d46d939263df2c327093c6bb21d74a29c0d 8fd55d4
Sunday, 22 May 2022
20:17 Dima Panov (fluffy) search for other commits by this committer
biology/cufflinks: mark as BROKEN after recent boost upgrade

PR:	246106
commit hash: 1054b6f30ebfba3325a6d2cdb7bc1def670d3b31 commit hash: 1054b6f30ebfba3325a6d2cdb7bc1def670d3b31 commit hash: 1054b6f30ebfba3325a6d2cdb7bc1def670d3b31 commit hash: 1054b6f30ebfba3325a6d2cdb7bc1def670d3b31 1054b6f
Monday, 10 Jan 2022
15:15 Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).

A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.

These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,

Approved by:	portmgr (implicit)
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 bcaf25a
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 12 Dec 2020
17:04 thierry search for other commits by this committer
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
Original commitRevision:557839 
Monday, 3 Aug 2020
17:40 jwb search for other commits by this committer
biology/htslib: Upgrade to 1.10.2

Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags

Bump PORTREVISION on dependents that don't require additional patching

PR:             248089
Original commitRevision:544090 
Wednesday, 8 Jul 2020
10:37 pkubaj search for other commits by this committer
biology/cufflinks: fix build on GCC architectures

Using Boost requires modern compiler.

MFH:		2020Q3 (fix build blanket)
Original commitRevision:541482 
Tuesday, 31 Mar 2020
06:42 yuri search for other commits by this committer
biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89

Add the pull request that fixes the boost::thread build failures.
Original commitRevision:529953 
Wednesday, 11 Dec 2019
17:53 jbeich search for other commits by this committer
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Original commitRevision:519824 
Monday, 19 Aug 2019
15:35 jbeich search for other commits by this committer
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
Original commitRevision:509290 
Saturday, 25 May 2019
22:28 yuri search for other commits by this committer
New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their
abundance, etc
Original commitRevision:502661 

Number of commits found: 19