| non port: biology/consed/Makefile |
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SVNWeb
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Number of commits found: 20 |
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Sat, 4 Apr 2020
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[ 20:51 antoine  ]   (Only the first 10 of 520 ports in this commit are shown above.  )
Deprecate ports broken for more than 6 months
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Wed, 6 Nov 2019
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[ 12:48 antoine ] (Only the first 10 of 268 ports in this commit are shown above. )
Mark a few ports BROKEN, unfetchable
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Mon, 5 Sep 2016
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[ 19:23 tijl ] (Only the first 10 of 303 ports in this commit are shown above. )
- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
Mk/Uses/linux.mk.
- Replace USE_LINUX=yes with USES+=linux and USE_LINUX=(.*) with
USES+=linux:\1 in all ports.
- Replace USE_LINUX_APPS with USE_LINUX in all ports.
- Use INSTALL_SCRIPT instead of INSTALL_PROGRAM to install scripts in some
ports.
- When USE_LINUX_RPM is defined, simplify the way DISTFILES and EXTRACT_ONLY
are defined.
- Remove BRANDELF_DIRS and BRANDELF_FILES handling. In the very rare cases
that it is still necessary ports can run ${BRANDELF} from post-patch.
- Remove AUTOMATIC_PLIST handling. Only one port used it.
- Fix Linux MASTER_SITES.
- Replace OVERRIDE_LINUX_BASE_PORT and OVERRIDE_LINUX_NONBASE_PORTS with
default versions framework.(Only the first 15 lines of the commit message are shown above )
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Fri, 1 Apr 2016
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[ 13:29 mat ] (Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Sat, 26 Dec 2015
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[ 13:26 rene ]
biology/consed: undeprecate, it presumably builds fine but it is restricted.
Add a note to ports/LEGAL
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Sun, 25 Oct 2015
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[ 19:35 antoine ] (Only the first 10 of 95 ports in this commit are shown above. )
Deprecate ports broken for more than 6 months
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Mon, 13 Apr 2015
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[ 14:49 mat ]
${ENV} does not exist, it is called ${SETENV}.
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Sun, 5 Apr 2015
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[ 17:55 bapt ]
Mark as broken unfetchable ports
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Sat, 23 Aug 2014
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[ 18:04 pi ] (Only the first 10 of 31 ports in this commit are shown above. )
update ports:
biology/phrab
biology/phred
biology/consed
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
PR: 191336
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
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Tue, 29 Jul 2014
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[ 19:11 adamw ] (Only the first 10 of 436 ports in this commit are shown above. )
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
Approved by: portmgr (not really, but touches unstaged ports)
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Mon, 9 Jun 2014
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[ 11:21 olgeni ] (Only the first 10 of 120 ports in this commit are shown above. )
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.
CR: D196
Approved by: portmgr (bapt)
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Sat, 10 May 2014
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[ 18:07 antoine ]
Replace maintainer's email address with one that seems to work
With hat: portmgr
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Fri, 21 Feb 2014
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[ 13:35 ehaupt ]
Remove trailing whitespaces from category biology
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Mon, 10 Feb 2014
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[ 13:54 ehaupt ] (Only the first 10 of 581 ports in this commit are shown above. )
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.
This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.
Approved by: portmgr (bapt)
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Fri, 3 Jan 2014
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[ 15:46 adamw ] (Only the first 10 of 14 ports in this commit are shown above. )
Convert biology to MDOCS and MEXAMPLES
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Fri, 20 Sep 2013
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[ 15:55 bapt ] (Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Sat, 7 Sep 2013
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[ 07:44 az ] (Only the first 10 of 19 ports in this commit are shown above. )
- convert to the new perl5 framework
Approved by: portmgr (bapt@, blanket)
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Thu, 19 Mar 2009
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[ 17:28 bsam ] (Only the first 10 of 136 ports in this commit are shown above. )
Welcome to the new linux ports infrastructure which allows using
both current (fc4) and future linux (f8) distributions at one
ports tree.
The patch contains full changes to ports/Mk files and all ports involved.
But only infrastructure is changed. The resulting packages are the same as
before. Hence no need to bump PORTREVISIONs.
The idea was taken from bsd.gnome.mk and others.
More than 130 ports are switched to follow a new linux infrastructure
introduced by changes to bsd.port.mk, bsd.linux-rpm.mk and a new
bsd.linux-apps.mk.
Thanks for all who was involved and helped me with this work.
And help from Alexander Leidinger was incredible.
Other changes are coming. Stay tuned!
PR: ports/132510
Submitted by: bsam (me)
Exp-run by: portmgr (pav)
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Sun, 25 May 2008
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[ 23:05 edwin ]
Teach the building cluster that these ports are not to be build
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Sat, 24 May 2008
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[ 07:00 edwin ]
New port: biology/consed viewing and editing workbench for sequence
assembly
Consed is a tool for viewing, editing, and finishing sequence
assemblies.
The port is constituted of 4 parts:
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
biology/consed: workbench
biology/phd2fasta: small utility
All these can be used separately; however, most function
of consed depends on the others.
Although these programs are licensed freely for academic
and nonprofit purposes, users have to contact the authors
to get the softwares.
Phred (including phd2fasta) and phrap are emailed,
and consed can be downloaded to a restricted IP address.
For commercial users, the licensing fee is ca. $10,000 at
the time of writing.
PR: ports/118548
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
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Number of commits found: 20 |
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