non port: biology/clustalw/Makefile |
Number of commits found: 28 |
Saturday, 15 Jul 2023
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23:18 Jason W. Bacon (jwb)
biology/clustalw: Unbreak build for clang 16
Add -std=c++14
Reported by: pkg-fallout
5cbb020 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
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14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Monday, 21 May 2018
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01:13 jwb
biology/clustalw: Fix license, take maintainership
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15503
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Wednesday, 25 May 2016
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15:43 mat
Remove useless WRKSRC definitions.
While there, correct DEV_WARNINGS when they occur.
Sponsored by: Absolight
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Thursday, 14 May 2015
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10:15 mat
MASTER_SITES cleanup.
- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.
While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.
Also, replace some EXTRACT_SUFX occurences with USES=tar:*.
Checked by: make fetch-urlall-list
With hat: portmgr
Sponsored by: Absolight
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Monday, 26 May 2014
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02:33 eadler
Multiple ports: reset maintainers
Maintainers for these ports have been notified on 5 separate occasions
over the course of several months about pending actions required.
We really appreciate the time and effort you put in to maintain
these ports.
If you are still interested in helping to maintain these ports just
reply to me or file a PR and I will happily assign the port to you
again.
Approved by: portmgr (implicit)
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Friday, 20 Dec 2013
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15:29 wen
- Fix build with clang/libc++.
- Support staging.
PR: 184974
Submitted by: tijl@
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Thursday, 11 Aug 2011
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19:20 kwm
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.
PR: ports/159624
Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
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Tuesday, 21 Dec 2010
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00:12 wen
- Fix fetch
Reported by: QAT@
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Monday, 22 Nov 2010
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00:15 wen
- Update to 2.1
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Sunday, 27 Dec 2009
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03:05 wen
- Fix fetch error
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Sunday, 29 Nov 2009
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01:16 wen
- Update to 2.0.12
- Update my mail address to FreeBSD
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Tuesday, 29 Apr 2008
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12:58 miwi
- Update to 2.0.6
- Pass maintainership to submitter
PR: 123193
Submitted by: Wen heping <wenheping@gmail.com>
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Wednesday, 19 Mar 2008
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14:01 jadawin
- Update to 2.0.5
- Add RESTRICTED due to non-commercial use licence.
PR: ports/121794
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
Approved by: thierry and tabthorpe (mentors)
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Tuesday, 26 Feb 2008
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19:53 pav
- Restore clustalw symlink, other ports rely on it
Reported by: pointyhat
Pointy hat to: pav
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Monday, 25 Feb 2008
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22:05 pav
- Update to 2.0.3
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Saturday, 15 Dec 2007
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18:47 pav
- Update to 2.0
PR: ports/117713
Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
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Sunday, 11 Mar 2007
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03:20 linimon
Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch.
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Saturday, 15 Feb 2003
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18:43 naddy
Update to 1.83.
PR: 48264
Submitted by: David A. Bader <dbader@eece.unm.edu>
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Wednesday, 27 Mar 2002
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14:01 wjv
- Add a new patch
- Bump $PORTREVISION
PR: 36206
Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
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Friday, 22 Mar 2002
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08:23 wjv
- Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
FreeBSD-bio list
PR: 36169
Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
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Tuesday, 10 Jul 2001
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14:54 sobomax
${PREFIX}/share/${PORTNAME} --> ${DATADIR}
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Tuesday, 3 Jul 2001
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09:10 wjv
Update to version 1.82
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Tuesday, 3 Oct 2000
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02:10 jeh
- Support CC/CFLAGS/PREFIX properly - gets() -> fgets() - Add WWW: line into
pkg/DESCR
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Monday, 10 Jul 2000
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04:17 steve
Adding clustalw version 1.81. A CLUSTAL W Multiple Sequence Alignment Program.
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Number of commits found: 28 |