notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details
cdbfasta Fast indexing and retrieval of FASTA records from flat file databases
2023.07.10 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 2023.07.10Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-09-25 18:37:34
Last Update: 2023-07-11 15:40:27
Commit Hash: ffa0a81
License: ART20
WWW:
https://github.com/gpertea/cdbfasta
Description:
Cdbfasta creates an index file for a multi-FASTA file to facilitate fast retrieval of any sequence using cdbyank.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/cdbfasta
  2. bin/cdbyank
  3. /usr/local/share/licenses/cdbfasta-2023.07.10/catalog.mk
  4. /usr/local/share/licenses/cdbfasta-2023.07.10/LICENSE
  5. /usr/local/share/licenses/cdbfasta-2023.07.10/ART20
Collapse this list.
Dependency lines:
  • cdbfasta>0:biology/cdbfasta
To install the port:
cd /usr/ports/biology/cdbfasta/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/cdbfasta
  • pkg install cdbfasta
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: cdbfasta
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1689089752 SHA256 (gpertea-cdbfasta-2023.07.10-da8f5ba_GH0.tar.gz) = c32c1b09998ae24333dbf432740ef7d087d4c8987e8131363233242542d048ac SIZE (gpertea-cdbfasta-2023.07.10-da8f5ba_GH0.tar.gz) = 63949

Packages (timestamps in pop-ups are UTC):
cdbfasta
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest2023.07.102023.07.102010.07.222023.07.102023.07.10-2010.07.22-
FreeBSD:13:quarterly2023.07.102023.07.102010.07.222023.07.102023.07.102023.07.102023.07.102023.07.10
FreeBSD:14:latest2023.07.102023.07.102010.07.222023.07.102023.07.102010.07.22-2010.07.22
FreeBSD:14:quarterly2023.07.102023.07.10-2023.07.102023.07.102023.07.102023.07.102023.07.10
FreeBSD:15:latest2023.07.102023.07.10n/a2023.07.10n/a2023.07.102023.07.102023.07.10
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_cdbfasta
USES:
gmake
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/gpertea/cdbfasta/tar.gz/da8f5ba?dummy=/
Collapse this list.

Number of commits found: 10

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
2023.07.10
11 Jul 2023 15:40:27
commit hash: ffa0a812a47681edb1b7de3cc38e6cd27c3c1296commit hash: ffa0a812a47681edb1b7de3cc38e6cd27c3c1296commit hash: ffa0a812a47681edb1b7de3cc38e6cd27c3c1296commit hash: ffa0a812a47681edb1b7de3cc38e6cd27c3c1296 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/cdbfasta: Update to 2023.07.10

Upstreamed patches against 2018.10.05 commit
2018.10.05
10 Jul 2023 15:29:23
commit hash: cc903ba092636e40c1f322c29a83447718dc7a39commit hash: cc903ba092636e40c1f322c29a83447718dc7a39commit hash: cc903ba092636e40c1f322c29a83447718dc7a39commit hash: cc903ba092636e40c1f322c29a83447718dc7a39 files touched by this commit
Jason W. Bacon (jwb) search for other commits by this committer
biology/cdbfasta: Update to 2018.10.05

Fix build for c++17
Improve pkg-descr
Add license

Reported by:    pkg-fallout
07 Sep 2022 21:58:51
commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash: fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
2010.07.22
07 Sep 2022 21:10:59
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2010.07.22
20 Jul 2022 14:20:57
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
2010.07.22
06 Apr 2021 14:31:07
commit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344ebcommit hash: 305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
2010.07.22
31 Jan 2018 01:07:08
Revision:460452Original commit files touched by this commit
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
2010.07.22
20 Jan 2017 20:33:31
Revision:431996Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
2010.07.22
11 Dec 2015 08:48:57
Revision:403506Original commit files touched by this commit
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
2010.07.22
25 Sep 2015 18:37:25
Revision:397850Original commit files touched by this commit
rm search for other commits by this committer
Fast indexing and retrieval of FASTA records from flat file data bases.

WWW: http://sourceforge.net/projects/cdbfasta/

PR:		203233
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 10