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non port: biology/cd-hit/distinfo

Number of commits found: 3

Thursday, 14 Mar 2019
23:59 jwb search for other commits by this committer
biology/cd-hit: Upgrade to 4.8.1

Convert Makefile REINPLACE to patch for sending upstream
Original commitRevision:495746 
Tuesday, 20 Dec 2016
16:48 jrm search for other commits by this committer
biology/cd-hit: Update to bug-fix release 4.6.6

Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads

Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not
satisfy representative sequences' -aL requirement. This will make compute
faster in clustering settings where sequences in the same cluster are
required to have similar length using -aL -AL option (e.g. -aL 0.9).

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:
Original commitRevision:429002 
Saturday, 19 Sep 2015
11:16 wen search for other commits by this committer
CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.


PR:		203183
Submitted by:
Original commitRevision:397318 

Number of commits found: 3